Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11540 772 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 520 / 1e-179 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 514 / 1e-177 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46760 514 / 2e-177 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 485 / 9e-166 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 473 / 3e-161 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 241 / 8e-76 FAD-dependent oxidoreductase family protein (.1) AT3G47930 63 / 4e-10 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178400 [exp] 530 / 0 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178300 [exp] 528 / 0 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 67 / 2e-11 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038620 [exp] 869 / 0 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 482 / 1e-164 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 479 / 8e-164 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 478 / 4e-163 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 465 / 2e-159 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010105 [exp] 463 / 2e-157 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 424 / 2e-143 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010107 [exp] 166 / 1e-47 AT2G46760 262 / 2e-84 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 116 / 9e-27 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10010106 [exp] 99 / 4e-24 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF04030 [poplar] [flax] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Potri.018G039600.1 pacid=42800734 polypeptide=Potri.018G039600.1.p locus=Potri.018G039600 ID=Potri.018G039600.1.v4.1 annot-version=v4.1 ATGTTCTCCTTCCGGTGGCTCCTGGGTGCCTTGCACCTCACTATTTGGGGTCCAGTCACACTGACCATGACCCATGCCATGCTGCCACCGCCCCCAGTTC AATGCAACGACAATGGCTGCACCCTTTACAACTCCTATGGTGTATGGAATGATAGAAAAGATTGTCATGTTCCAAGCATCACTTACCCTACGACAGAAGA AGAGATGAGGTTAGCTGTTGCACATGCCAATCAAAATAACCTCAAGGTGAAGGTGGTTAGCCGATTTTCGCACACAATACCAAAGTTGGCCTGCCCAGAT GATGCACAGCATGGCAACTCAATGTTGATAAGCACATTGAAGTATAATTCTAGCATTGAAATTGACACCGCTAATTTAGCTGTGACAGCTGATGCGGGCG TAGGTCTACGCGAGCTTATCGATGAGGTTGAGCGATCTGGATTGAGCTTGGTGCCAGCACCATATTGGGAGGGTGTGAGTGTTGGAGGAGTAATTAGTAC TGGGGCACATGGGAGTTCTTGGTGGGGAAAAGGTGGAGCCGTCCACGACCATGTTATTGGCCTTAACCTTATCGTCCCCGCAAGAGAGTCTGAAGGATAT GCTAAAATTATCAGAATTGGAGCCAAAGATCCCCTCTTGAATGCAGCGAAAGTATCATTGGGAATGCTGGGTGTCATCTCCAAGGTGAAGCTGTCTCTAG AGCCAGCATTCAAAAGAAGCGTAGCATATAATTTCACAGATGATGCTCACATAGAGGATATATTCATGGATCATGGTAAGAAATATGAATTTGCTGATGT TACTTGGTACCCATCAAGGCATACAGCTGTGTACAGATATGATTACAGAGTTCCCTTAAGCACCTCTGGTAATGGAGAATATGATTTCCTTGGATTTCAG CCTAACTCAATTGTGGTCTCCAAAGCAACTAGATCATCAGAGAAATTACTGGAGAGTGCGCGTAATGTGAATGGAAAGTGTGCCTTGGCAACCACATTTG TGGGGTTTAAGAAGTTAGTGGCCAACGGATTGAAGAATGGCCTAATCTTTACAGGCTATCCAGTGGTGGGTCATCAGGGAAAAATGCAGACCTCAGGTTC ATGTTTATATTCAACAAAGATCGACACCTCTTGTGCGTGGGATCCAAGAATCGGTGGTCTGTTCTTTTACGAGACAACAGCAATATTTCCTGCTTTAAAA TTTGGAGATTTTCTCCGAGATGTGAAGAAACTGAGAGACCTTAAACCAGAGAATTTTTGCGGGGTTGACATCTACAATGGTTTCCTGATACGTTTCATCA AGGCTTCTCAGGCATATCTAGGCCAATCTGAGGACTCAATAGTACTCGATTATAACTATTATCGTGCTGATGATTCTTCAACTCCAAGGCTAAACCAAGA TGTATGGGAAGAAGTGGAGCAAATGGCATTCTTCAAATATGGGGCAAAACCACATTGGGCTAAGAACAGGAATTTGGCGTTCTTGGATTTGCAGCACAAG TATCCTAATTTCAGCAAGTTTCTAGCAGCAAAGAAGCAACTGGACCCTAAGAACATGTTCTCCGGTGAATGGTCAGATGAGATATTATATGGTAAAGAAG CTGCGAAAGCTGATGGATGTGCCTTAGAGGGGCAATGTATATGCTCAGAGGATATACACTGTAGCCCAAAAAAGGGGTATTTCTGTGAACAAGGTCTAGT TTATAAAGAAGCTAGGGTCTGCAGGTATTCATCATCAGCTACAAAATAA
AA sequence Show only first row Show all	>Potri.018G039600.1 pacid=42800734 polypeptide=Potri.018G039600.1.p locus=Potri.018G039600 ID=Potri.018G039600.1.v4.1 annot-version=v4.1 MFSFRWLLGALHLTIWGPVTLTMTHAMLPPPPVQCNDNGCTLYNSYGVWNDRKDCHVPSITYPTTEEEMRLAVAHANQNNLKVKVVSRFSHTIPKLACPD DAQHGNSMLISTLKYNSSIEIDTANLAVTADAGVGLRELIDEVERSGLSLVPAPYWEGVSVGGVISTGAHGSSWWGKGGAVHDHVIGLNLIVPARESEGY AKIIRIGAKDPLLNAAKVSLGMLGVISKVKLSLEPAFKRSVAYNFTDDAHIEDIFMDHGKKYEFADVTWYPSRHTAVYRYDYRVPLSTSGNGEYDFLGFQ PNSIVVSKATRSSEKLLESARNVNGKCALATTFVGFKKLVANGLKNGLIFTGYPVVGHQGKMQTSGSCLYSTKIDTSCAWDPRIGGLFFYETTAIFPALK FGDFLRDVKKLRDLKPENFCGVDIYNGFLIRFIKASQAYLGQSEDSIVLDYNYYRADDSSTPRLNQDVWEEVEQMAFFKYGAKPHWAKNRNLAFLDLQHK YPNFSKFLAAKKQLDPKNMFSGEWSDEILYGKEAAKADGCALEGQCICSEDIHCSPKKGYFCEQGLVYKEARVCRYSSSATK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11540			D-arabinono-1,4-lactone oxidas...		Potri.018G039600 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113132 [exp]	5.19	0.8260
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Potri.005G256000 [exp]	6.63	0.8210	XCP2.1
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178300 [exp]	8.24	0.7197
AT5G61750			RmlC-like cupins superfamily p...		Potri.012G111500 [exp]	9.79	0.8131
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Potri.006G109900 [exp]	10.95	0.8074
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G401300 [exp]	11.83	0.7892
AT5G18460			Protein of Unknown Function (D...		Potri.013G050100 [exp]	15.00	0.7455
AT3G62160			HXXXD-type acyl-transferase fa...		Potri.014G113600 [exp]	15.42	0.7242
AT3G14160			2-oxoglutarate-dependent dioxy...		Potri.003G070100 [exp]	17.43	0.6947
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.008G086400 [exp]	17.88	0.7004

Compare expression of checked genes

Potri.018G039600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.