Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11560 1419 / 0 catalytics (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240300 [exp] 1816 / 0 AT5G11560 1387 / 0.0 catalytics (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011690 [exp] 1514 / 0 AT5G11560 1371 / 0.0 catalytics (.1) Lus10022144 [exp] 1224 / 0 AT5G11560 1116 / 0.0 catalytics (.1) Lus10022143 [exp] 155 / 3e-44 AT5G11560 144 / 5e-41 catalytics (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07774 [poplar] [flax] EMC1_C ER membrane protein complex subunit 1, C-terminal CL0186 [poplar] [flax] Beta_propeller PF13360 [poplar] [flax] PQQ_2 PQQ-like domain
Representative CDS sequence Show only first row Show all	>Potri.018G039800.1 pacid=42800968 polypeptide=Potri.018G039800.1.p locus=Potri.018G039800 ID=Potri.018G039800.1.v4.1 annot-version=v4.1 ATGGCCATGGCGATTAGGTCTCTGCTTATCTTTTTATGTATCCTATCAATTACAGTCCCTACCTTTTCTCTTTATGAAGATCAAGCCGGCCTCATGGACT GGCATCAAAAGTACATAGGGAAAGTGAAGCACGCAGTGTTCCAAACACAAAAAACTGGTCGAAAGCGTGTTCTTGTTTCTACTGAAGAGAATGTTATTGC TTCTCTTGATCTCCGTCACGGCGAGATTTTTTGGAGGCATGTTCTTGGGACCAATGATGCTATTGATGGAATCGATATTGCCATGGGAAAATATCTTATT ACCCTTTCATCAGAAGGAAGCATTCTAAGAGCATGGAACCTTCCTGATGGGCAGATGTGGTGGGAATCTTTTCTTCAGGGACCAAGCGACTCAAAGTCAT TCTTGTTCGTTTCGACAAGCACGAAAGTTGACAAGGACAACACAATCCTTGTTTTTGGTAAAGGAAGTCTCCATGCTATTTCAAGCATGCATGGTGAAAT TGTTTGGAAGGTGGATTTTCCTGCTGAAAGTTTTGAGGTTCAGGAAGTAATTCAGCACCATGACAGCAATACAATATATGTGGTGGGATTTGTTGGTTTT TCACTGTTTGATGTATACCAAATCAATGCTAAGAATGGAGAACTCCTAAAGCATGACAGTGCAGCCTTTGATGGTGGCTTTTCAGGGGAAGTTTCTTTAG TTTCAAAAGCCAAACTTGTGGTGCTGGATGCTGCAAGGTCAACTTTGTTAACAATAAGTTTTCAGAATGGAGAAATCAGCTTTCAGAAAACATATGTATC AGATCTAGTCAAGGATTTCTCAGGGATGGCAGTGATATTACCTTCAAAACTTACTGGTTTGTTTGCTGTGAAAACCAATACAGCTACAACATTTATTAGT GTGTCAAGTGAAGGTCAGTTGGAGGTGGTTGACAAAATCAATCATGCAACAGTTATTAGTGATGCTCTTTCATTCTCAGAGGACCGACAAGCATTTGCAT TGGTTCAGCATGGAGACAATGACATTCACCTCAATGTGAAGCAAGGTCATGACTGGAATAGTGATTTGCTAAAAGAGAGAATCAAGCTGAACCAGCAAAG AGGATTTGTCCATAAGGTTTTCATGAACAATTATGTCAGGACTGATAAGTCTCATGGATTTAGGGCTTTGATTGTGATGGAAGATCATTCATTGTTGCTG TTACAACAAGGTGCGATTGTCTGGAGTAGGGAGGATGGCCTTGCATCAATAATAGGAGTTACAACGTCAGAACTTCCTGTAGAAAAGAAAGGTGTATCTG TGGCCAAAGTGGAGCAGAACCTCTTCGAATGGCTTAAAGGACACATGCTGAAGGTTAAGGGTACATTGATGCTTGCAAGTGCTGAGGATGTAGCAGCCAT ACAAGGCATGAGGTTGAGAAGCTCTGAGAAAAGTAAAATGACCAGGGACCATAATGGATTCCGAAAGCTGCTCATTGTTCTCACTAAATCTGGGAAACTT TTTGCCTTGCACACTGGAGATGGACGAATTGTCTGGTCTGTCTTATTGAACTCTCTACGGCAATCAGAAGCATGTGAAAATCCAACTGGGATTAATGTAT ATCAGTGGCAGGTTCCTCATCATCATGCTATGAATGAAAATCCATCTGTTCTGGTAGTTGGCAGGTGCAAACCAAGTTCTGATGCACCAGGAATATTTTC CTTTGTTGATACATACACAGGGAAGGAGCTGAAGTCCTTTGGTCTTGATCATTCTGTTGCACAAGTCATTCCACTCCCGTTCACAGATTCAACAGAACAA CGTCTGCATCTACTAATAGATACAAGTGGACAGGCACATTTGTACCCAAGAGCACCTGAGGCTGTTGCCATTTTTCAACTTGAGTTTTCAAACATTTATT GGTACTCGGTAGAAGCTGATAATGGTGTTATTAAGGGACATGGATTGAAGAGCAATTGTGATGGTGAAGTTGCAAACAACTATTGTTTTGGTACCAGAGA AGTATGGTCCATTGTATTCCCCTCAGAATCCGAAAAGATCATTACAACCATAACAAGAAATTCAAATGAGGCAGTTCATACACAAGCAAAAGTTGTTGCT GATCAAGATGTGATGTACAAATATATATCAAAAAATTTGCTTTTTGTGGCCACTGTCTCACCTAAAGCCAGTGGAGATATTGGATCAGCCACACCAGAAG AATCACATTTGGTCGTCTATGTTGTTGATACTGTTACTGGTCGTATATTGCATCGAATGAATCATCATGGCTCGCAGGGTCCTGTCCATGCAGTTTTTAG TGAAAATTGGATTGTCTACCACTACTTCAATCTCAGAGCACACAGATATGAGATGACAGTTATTGAAATTTATGACCAGTCTCGGGCAGACAACAAAGAT GTTTGGAAGCTTGTTCTTGGAAAGCACAATCTCACTTCACCTATGTCTTCATATTCACGACCAGAGGTCACAACAAAGTCACAATCTTACTATTTCACCC ATTCTGTCAAAGCGATAACAGTTACGTCAACTGCTAAGGGTATCACTTCGAAGCATCTTCTTATTGGGACAATTGGTGATCAGGTATTGGCAATGGATAA GCGTTTCTTTGACCCTCGTCGGTCAGTTAACCCCACACAATCAGAGAAGGAAGAAGGAATTTTACCTCTTACAGATTCATTGCCTATCATTCCTCAATCA TATGTTACACATGCCCTTAAAGTGGAGGGGCTCCGAGGCATAGTGACAGTGCCTGCCAAGCTGGAGTCAGCCACCCTTGTCTTTACATATGGTGTGGATC TCTTCTTCACTCGCCTTGCACCCTCAAGGACCTATGATTCTCTTACAGAGGATTTTAGCTATGCTCTGCTGCTCATAACCATTTTCGTACTTATCGCGGC AATCTTTGTGACATGGGTTCTGTCCGAGAAGAAGGATCTCAGAGATAAATGGAGGTGA
AA sequence Show only first row Show all	>Potri.018G039800.1 pacid=42800968 polypeptide=Potri.018G039800.1.p locus=Potri.018G039800 ID=Potri.018G039800.1.v4.1 annot-version=v4.1 MAMAIRSLLIFLCILSITVPTFSLYEDQAGLMDWHQKYIGKVKHAVFQTQKTGRKRVLVSTEENVIASLDLRHGEIFWRHVLGTNDAIDGIDIAMGKYLI TLSSEGSILRAWNLPDGQMWWESFLQGPSDSKSFLFVSTSTKVDKDNTILVFGKGSLHAISSMHGEIVWKVDFPAESFEVQEVIQHHDSNTIYVVGFVGF SLFDVYQINAKNGELLKHDSAAFDGGFSGEVSLVSKAKLVVLDAARSTLLTISFQNGEISFQKTYVSDLVKDFSGMAVILPSKLTGLFAVKTNTATTFIS VSSEGQLEVVDKINHATVISDALSFSEDRQAFALVQHGDNDIHLNVKQGHDWNSDLLKERIKLNQQRGFVHKVFMNNYVRTDKSHGFRALIVMEDHSLLL LQQGAIVWSREDGLASIIGVTTSELPVEKKGVSVAKVEQNLFEWLKGHMLKVKGTLMLASAEDVAAIQGMRLRSSEKSKMTRDHNGFRKLLIVLTKSGKL FALHTGDGRIVWSVLLNSLRQSEACENPTGINVYQWQVPHHHAMNENPSVLVVGRCKPSSDAPGIFSFVDTYTGKELKSFGLDHSVAQVIPLPFTDSTEQ RLHLLIDTSGQAHLYPRAPEAVAIFQLEFSNIYWYSVEADNGVIKGHGLKSNCDGEVANNYCFGTREVWSIVFPSESEKIITTITRNSNEAVHTQAKVVA DQDVMYKYISKNLLFVATVSPKASGDIGSATPEESHLVVYVVDTVTGRILHRMNHHGSQGPVHAVFSENWIVYHYFNLRAHRYEMTVIEIYDQSRADNKD VWKLVLGKHNLTSPMSSYSRPEVTTKSQSYYFTHSVKAITVTSTAKGITSKHLLIGTIGDQVLAMDKRFFDPRRSVNPTQSEKEEGILPLTDSLPIIPQS YVTHALKVEGLRGIVTVPAKLESATLVFTYGVDLFFTRLAPSRTYDSLTEDFSYALLLITIFVLIAAIFVTWVLSEKKDLRDKWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11560			catalytics (.1)		Potri.018G039800 [exp]	0	1
AT5G19690		STT3A	staurosporin and temperature s...		Potri.018G086000 [exp]	5.38	0.8908
AT1G63300			Myosin heavy chain-related pro...		Potri.001G106700 [exp]	7.74	0.8741
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	14.42	0.8867	KOR1.2
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	28.56	0.8766
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	29.32	0.8700
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Potri.016G000300 [exp]	34.05	0.8633
AT4G13710			Pectin lyase-like superfamily ...		Potri.003G175900 [exp]	41.66	0.8663
AT1G29240			Protein of unknown function (D...		Potri.011G067000 [exp]	48.61	0.8555
AT1G28400			unknown protein		Potri.011G057500 [exp]	49.47	0.8597
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.002G036600 [exp]	51.05	0.8599

Compare expression of checked genes

Potri.018G039800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.