Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08070 974 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 567 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 554 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G08820 544 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 543 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 530 / 1e-179 MEF22 mitochondrial editing factor 22 (.1) AT4G02750 528 / 7e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 525 / 1e-177 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 514 / 6e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 518 / 6e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071800 [exp] 646 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 639 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 622 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 611 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 604 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 599 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 590 / 0 AT3G22690 582 / 0.0 unknown protein Potri.005G012600 [exp] 574 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 553 / 0 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033026 [exp] 1097 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 1047 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 604 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 580 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 568 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 554 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010909 [exp] 533 / 0 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 532 / 0 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 526 / 4e-177 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001220 [exp] 521 / 8e-174 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.018G040100.1 pacid=42802006 polypeptide=Potri.018G040100.1.p locus=Potri.018G040100 ID=Potri.018G040100.1.v4.1 annot-version=v4.1 ATGAAGATGGTGGCATTGGCTTCACCCGTAAGTACTCTCCAAGCTCTTTCCTTCTCTGATCCTTCTCCGCCATACAAACTTGTCCATGACCATCCTTCTC TAACTCTCCTTTCCAACTGCAAAACCCTCCAGACTCTCAAACAAATCCACTCCCAAATCATCAAAACTGGCCTCCACAACACCCACTTCGCTCTTAGCAA GCTCATCGAGTTTTGCGCCGTCTCTCCACATGGTGACCTCTCTTATGCTCTCTCGCTCTTCAAAACCATTCGAAACCCCAATCATGTGATTTGGAATCAT ATGATCAGGGGTCTCTCATCGAGCGAATCCCCTTTTTTAGCTTTAGAATACTATGTTCATATGATTAGTTCTGGTACAGAGCCGAATGAGTACACCTTTC CTTCTATTTTCAAGTCATGCACCAAAATTAGAGGTGCCCATGAAGGGAAACAGGTCCATGCACATGTTTTGAAGCTTGGACTTGAACATAATGCCTTCGT ACATACTTCGTTGATTAACATGTATGCTCAAAATGGTGAATTGGTTAATGCAAGATTGGTGTTTGATAAAAGTTCTATGAGAGATGCTGTTTCTTTTACT GCTTTGATTACTGGGTACGCTTCGAAGGGTTTTTTGGATGAAGCTCGAGAGTTGTTTGATGAAATTCCTGTGAGAGATGTTGTGTCGTGGAATGCTATGA TTTCTGGGTATGCTCAGAGTGGTCGAGTCGAAGAGGCAATGGCATTCTTTGAAGAGATGCGTAGAGCAAAGGTTACACCTAATGTGAGCACAATGCTTAG TGTCCTTTCGGCCTGCGCTCAATCAGGATCTTCTCTTCAACTGGGCAATTGGGTTCGGTCTTGGATTGAAGATCGTGGACTTGGATCAAATATTAGGCTT GTAAACGGACTTATTGACATGTATGTTAAATGTGGAGATTTGGAAGAAGCCAGCAATCTATTTGAGAAAATACAGGATAAGAATGTGGTCTCATGGAATG TTATGATTGGTGGCTATACTCATATGAGCTGTTATAAGGAAGCCTTGGGGCTATTTAGGCGAATGATGCAGTCGAATATAGATCCTAATGATGTCACTTT CTTGAGCATTCTTCCGGCTTGTGCTAACTTGGGTGCGCTTGATCTTGGCAAATGGGTTCATGCTTATGTCGACAAGAACATGAAAAGTATGAAAAATACT GTTGCCCTATGGACAAGCCTCATTGACATGTATGCAAAATGTGGTGATTTAGCGGCAGCTAAACGAATCTTTGATTGCATGAATACTAAAAGCTTGGCAA CTTGGAATGCAATGATATCTGGGTTTGCCATGCACGGGCACACAGATACGGCTCTTGGGCTGTTCTCAAGAATGACTAGTGAGGGGTTTGTACCAGATGA CATCACTTTTGTTGGCGTGTTAACAGCTTGTAAGCATGCTGGTTTGCTAAGTCTTGGACGCAGATATTTTAGTTCAATGATCCAAGATTACAAGGTTTCT CCAAAATTGCCACACTATGGATGCATGATAGATCTTTTTGGTCGAGCCGGGTTGTTTGATGAAGCAGAAACCTTGGTGAAGAATATGGAAATGAAACCAG ATGGGGCCATTTGGTGCTCTCTTCTTGGAGCTTGTAGAATTCATAGACGCATTGAGTTGGCTGAATCTGTTGCCAAGCATCTTTTTGAACTAGAACCTGA AAACCCAAGCGCTTATGTGCTCTTGTCAAACATCTACGCAGGAGCTGGTAGATGGGAGGATGTAGCAAAAATAAGAACTAGGCTAAATGATAACAGGATG AAGAAAGTTCCTGGTTGTAGCTCTATTGAAGTAGATAGTGTGGTGCATGAGTTTCTTGTTGGTGACAAGGTCCATCCCCAGAGCAATGAAATCTACAAGA TGTTGGATGAAATTGATATGCGTTTGGAGAAAGCTGGTTTTGTACCAGATACGTCAGAGGTGCTCTACGACATGGATGAGGAGTGGAAAGAAGGGGTCTT GAGTCATCACAGTGAAAAGTTGGCCATTGCCTTTGGTTTGATCAGTACAAAGCCAGGGACAACAATCAGAATAATGAAGAATCTTCGCGTGTGTGGAAAT TGTCATTCTGCCACCAAATTAATATCAAAGATCTTCAATAGAGAAATTATTGCAAGAGATAGAAATCGTTTCCACCATTTCAAAGATGGTTCTTGCTCAT GTAAGGACTACTGGTGA
AA sequence Show only first row Show all	>Potri.018G040100.1 pacid=42802006 polypeptide=Potri.018G040100.1.p locus=Potri.018G040100 ID=Potri.018G040100.1.v4.1 annot-version=v4.1 MKMVALASPVSTLQALSFSDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNH MIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFT ALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNT VALWTSLIDMYAKCGDLAAAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVS PKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRM KKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGN CHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	0	1
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	2.44	0.9403
AT3G23020			Tetratricopeptide repeat (TPR)...		Potri.010G078900 [exp]	4.89	0.9437
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	7.34	0.9376	CRR2.1
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.006G053100 [exp]	7.48	0.9300
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	7.48	0.9368
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	8.06	0.9367
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.016G019900 [exp]	10.39	0.9233
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.004G059400 [exp]	10.95	0.9297
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	10.95	0.9273
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	16.73	0.8877

Compare expression of checked genes

Potri.018G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.