Plant FIBer expression Database

Potri.018G040200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32770 675 / 0 ATSDX1, VTE1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G240100
[exp]
326 / 6e-109 AT4G32770 308 / 2e-102 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009501
[exp]
721 / 0 AT4G32770 713 / 0.0 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
Lus10011696
[exp]
700 / 0 AT4G32770 700 / 0.0 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14249 Tocopherol_cycl Tocopherol cyclase
Representative CDS sequence
>Potri.018G040200.2 pacid=42801383 polypeptide=Potri.018G040200.2.p locus=Potri.018G040200 ID=Potri.018G040200.2.v4.1 annot-version=v4.1
ATGGAAGTACACATTCACAATTTCTCCCCTAATTTCTCACCACTTCGACCCCTAACAAACCCTAATTCCTCTATCAAACTCTATCACTCTCGAGATTCTA
CCTTTTCTATACCTCTATCGAAATCACTCAAGCTAGGGTTCCGATCATCGCCACTGCTGGCGGCGTCCACTCCCATCACTAACACCGATACTTCACTAGC
CTCAAATGGAGAAAATGAGAGGAGTGTGAGTCCAGTTTATGTGCCAACGCCACCTAATCGTGGGCTCCGTACTCCTCACAGCGGGTACCATTATGATGGG
ACGACGCGGAACTTTTTTGAAGGTTGGTATTTTAAAGTGTCGATACCGGAGCGGAAACAGAATTTCTGTTTCATGTATTCAGTGGAGAATCCTGCGTTTC
CTAAGAAATTGACTGCCTTGGAGTCGGCACAGCATGGATCGAGATCAATTGGAGTTGGTGCTCAGATTCTAGGGGCTTATGACAAGTATATTTGCCAATT
CTCTGAAGAATCGCAAGATTTCTGGGGAAGTAGGCATGAGCTGGCATTGGGGAATACTTTTGTTGCTGAGAGAAATATGCGGCCTCCAACTAAAGAGGTT
CCTCCTCAGGAATTTGATAAAAGAGTTTTAGAAGGATTTCAAGTAAGCCCACTTTGGCACCAAGGCTTTATTCGTGATGATGGCAGGTCAGATTATGTGG
AAACTGTGAAAACTGCACGTTGGCAGTACAGTACACGGCCTGTTTATGGATGGGGTAATGTTGGGTCTACACAGAAGTCGACTGCAGGGTGGCTTGCTGC
TTTTCCTGTATTTGAACCCCACTGGCAAATATGCATGGCCGGAGGACTTTCAACAGGATGGATAGAGTGGGATGGTGAAAGATTTGAGTTCGAAGATGCT
CCTTCTTATTCTGAAAAGAACTGGGGTGGAGCCTTCCCAAGAAAATGGTTTTGGGTTCAATGTAATGTCTTTGAAGGTGCAAGTGGAGAAGTTGCTTTGA
CTGCAGCTGGTGGGTTGAGGCAAATACCTGGACCAAGTGAGACTTTTGAAAATGCTGCATTGGTTGGAGTACATTATGATGGGATTTTCTATGAATTTGT
GCCATGGAATGGTGTTGTAAATTGGGAAATTTCTCCATGGGGTTACTGGTACATGGCTGCAGACAATGGGACACATTTGGTTGAATTGGAGGCAACAACA
AAGGAATTGGGAACAGCATTGCGTGCTCCAACAGCAGAAGCTGGGCTTTCTCCAGCTTGTAAAGATACCGGTTTTAGTTTTCTGAAATTGCAAATATGGG
AACGTCGATATGATGGCACTAAGGGGAAGTTAATTTTGGATGTTACAAGCGACATGGCATTAGTAGAAGTTGGAGGAGGACCATGGTTTACCACTTGGAA
AGGCAAGACATCTATGCCAGAGCTTGTCAGCCGCACTATTGGAGCCCCCATTGACGTGGATGGAATTTTTAGTTTTGTTCCTCTGTTCAAGCCCCCTGGT
TTATAA
AA sequence
>Potri.018G040200.2 pacid=42801383 polypeptide=Potri.018G040200.2.p locus=Potri.018G040200 ID=Potri.018G040200.2.v4.1 annot-version=v4.1
MEVHIHNFSPNFSPLRPLTNPNSSIKLYHSRDSTFSIPLSKSLKLGFRSSPLLAASTPITNTDTSLASNGENERSVSPVYVPTPPNRGLRTPHSGYHYDG
TTRNFFEGWYFKVSIPERKQNFCFMYSVENPAFPKKLTALESAQHGSRSIGVGAQILGAYDKYICQFSEESQDFWGSRHELALGNTFVAERNMRPPTKEV
PPQEFDKRVLEGFQVSPLWHQGFIRDDGRSDYVETVKTARWQYSTRPVYGWGNVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFEDA
PSYSEKNWGGAFPRKWFWVQCNVFEGASGEVALTAAGGLRQIPGPSETFENAALVGVHYDGIFYEFVPWNGVVNWEISPWGYWYMAADNGTHLVELEATT
KELGTALRAPTAEAGLSPACKDTGFSFLKLQIWERRYDGTKGKLILDVTSDMALVEVGGGPWFTTWKGKTSMPELVSRTIGAPIDVDGIFSFVPLFKPPG
L

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32770 ATSDX1, VTE1 tocopherol cyclase, chloroplas... Potri.018G040200
[exp]
0 1
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Potri.001G265400
[exp]
7.00 0.8621
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Potri.012G080900
[exp]
11.04 0.8962 DXR.1
AT4G35300 TMT2 tonoplast monosaccharide trans... Potri.002G006200
[exp]
21.63 0.8535
AT2G03390 uvrB/uvrC motif-containing pro... Potri.010G161600
[exp]
23.06 0.8820
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.016G074900
[exp]
30.39 0.8525
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Potri.007G082500
[exp]
41.92 0.8643
AT2G29990 NDA2 alternative NAD(P)H dehydrogen... Potri.009G047100
[exp]
42.28 0.8536
AT1G16720 HCF173 high chlorophyll fluorescence ... Potri.007G003500
[exp]
59.39 0.8491
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.006G208300
[exp]
59.44 0.8485
AT1G79710 Major facilitator superfamily ... Potri.001G041600
[exp]
59.62 0.8160

Potri.018G040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.