Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 493 / 3e-170 Major facilitator superfamily protein (.1) AT3G16180 489 / 8e-169 Major facilitator superfamily protein (.1) AT1G69870 307 / 1e-97 NRT1.7 nitrate transporter 1.7 (.1) AT1G68570 295 / 3e-93 Major facilitator superfamily protein (.1) AT5G28470 277 / 6e-87 Major facilitator superfamily protein (.1) AT1G18880 271 / 3e-84 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G62680 266 / 4e-82 Major facilitator superfamily protein (.1) AT1G27080 259 / 1e-79 NRT1.6 nitrate transporter 1.6 (.1) AT3G47960 259 / 2e-79 Major facilitator superfamily protein (.1) AT1G62200 257 / 1e-78 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240000 [exp] 820 / 0 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 508 / 2e-176 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 445 / 2e-151 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 439 / 3e-149 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 439 / 3e-149 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 428 / 6e-145 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 424 / 2e-143 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 420 / 4e-142 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 411 / 9e-139 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 488 / 4e-168 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 462 / 1e-157 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 411 / 5e-138 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 404 / 4e-135 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 356 / 2e-117 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10036669 [exp] 313 / 7e-100 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 300 / 6e-95 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 299 / 9e-95 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10037221 [exp] 297 / 1e-93 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 292 / 1e-91 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.018G040301.3 pacid=42802087 polypeptide=Potri.018G040301.3.p locus=Potri.018G040301 ID=Potri.018G040301.3.v4.1 annot-version=v4.1 ATGGAAAACACAATTGCAGAGGAGAAGATGATTCTCATCCCCAAGGACAAGGACCGAAAAAAGGGTGGCCTAAGGACCATGCCCTTCATCATAGTTAATG AGGCGTTTGAGAGGGTGGCTAGCTATGGGCTGATGCCAAATATGATATTCTACCTGATGAATAACTATCGCTTGGAGGCTGCAAATGGGTCGACCATTCT CTTCTTATGGTCTGCTATGTCTAATGGGTTGTCCAACTTCGGAGCTTTCCTCTCCGATTCATTCATGGGACGGTATCTGGTGATCTCTTTGGGATCATTC TGCAGCCTTCTTGGGATGATTCTTCTTTGGTTAACTGCCATGATACCACAACTACAACCTCCACCTTGTGACCGATTCACAGAAACGTGCAGCTCAGCTA CAGCGGGCCAAATGGCTATCTTATTCTTCTCTTTCGGCCTTATATCCATTGGAGCTGGTTGCATTAGGCCTTGCTCTAATGCCTTCGGCGCAGACCAATT AGACAACGAAGAGAACCCCAACAATGAGAGTGTCTTGCAGAGTTTCTTTAATTGGTATTATGCTGCAACAGGATTATCAACAATTATAGCATTTACTGTT ATTGTCTACATTCAAGATAACCTCGGTTGGAAAGTTGGGTTTGCCGTTCCTGCAATTCTCATGTTCCTCTCTGCTTTAACGTTTCTGGTGGGTTCTTCCC AGTACATCAAAGTGAAGGCCTCCTCGAGCTTATTTACAGGTTTTGTTCAAGTTGTGGTTGCAGCATTCAGGAACAGAAAGCTCAATCTATCTCACGGTAG CATTGAACAGCATTACCACAGTGATGACTCTGAGTTCCAGGTCCCTACTGATAATTTAAGGTACACCAGTGTTAACACAATGATGACTCGAAGTTTTGCT TCGATGCTTGACTATCCAAATCATCTCTCCTTAACATTTCTCAGCACTTTGTGCAGGTGTCTGAACCGAACTTGTATCATAATAGATCCTGATAGGGATG TAAATCTTGATGGGTCAGCTTCAAATCCATGGCGGCTATGCACAGTTGATCAGGTAGAGTCACTGAAAGCTCTGCTTAGAGTCATCCCCATTTGGACTAC AGGCATCATGATGCATATCAACTTGAACCAAAACTCATTTGCCACGCTCCAAGCAAACACCATGGACAGGAACATCTTGAATTTTGAACTTCCAGCAGGA TCCCTCAATGTGTTTCTGGTTCTCACTCTCACAATCTGGCTAACCTTTTATGACCGAATTCTGTTGCCATTGTTAGCAAGATTCACCGGCAGGCCACGTG GCGGGCTTAGTCCTAAAGTGAGGATAGGAATTGGTTTGCTAGTCCCAGTTGCAGCAAGGGCAATGTCAGCAGTAGTAGAAACCATAAGAAGGAAAACTGC TATTGAGGAAGGACTAGAAGACGAACCTGACGGTGTGGTGAACGTCAGTAGTGTGGCTTTTGCCACCAATAATCCTGCTTGGATTGGCTGA
AA sequence Show only first row Show all	>Potri.018G040301.3 pacid=42802087 polypeptide=Potri.018G040301.3.p locus=Potri.018G040301 ID=Potri.018G040301.3.v4.1 annot-version=v4.1 MENTIAEEKMILIPKDKDRKKGGLRTMPFIIVNEAFERVASYGLMPNMIFYLMNNYRLEAANGSTILFLWSAMSNGLSNFGAFLSDSFMGRYLVISLGSF CSLLGMILLWLTAMIPQLQPPPCDRFTETCSSATAGQMAILFFSFGLISIGAGCIRPCSNAFGADQLDNEENPNNESVLQSFFNWYYAATGLSTIIAFTV IVYIQDNLGWKVGFAVPAILMFLSALTFLVGSSQYIKVKASSSLFTGFVQVVVAAFRNRKLNLSHGSIEQHYHSDDSEFQVPTDNLRYTSVNTMMTRSFA SMLDYPNHLSLTFLSTLCRCLNRTCIIIDPDRDVNLDGSASNPWRLCTVDQVESLKALLRVIPIWTTGIMMHINLNQNSFATLQANTMDRNILNFELPAG SLNVFLVLTLTIWLTFYDRILLPLLARFTGRPRGGLSPKVRIGIGLLVPVAARAMSAVVETIRRKTAIEEGLEDEPDGVVNVSSVAFATNNPAWIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52190			Major facilitator superfamily ...		Potri.018G040301 [exp]	0	1
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.001G249200 [exp]	6.92	0.9358
AT3G26380			Melibiase family protein (.1)		Potri.010G048300 [exp]	7.34	0.9305
AT4G16580			Protein phosphatase 2C family ...		Potri.005G125700 [exp]	13.26	0.9219
AT5G02070			Protein kinase family protein ...		Potri.006G118500 [exp]	14.45	0.9159
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.010G189800 [exp]	15.23	0.9353
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102700 [exp]	18.33	0.9117	Pt-GLR3.5
AT4G23060		IQD22	IQ-domain 22 (.1)		Potri.003G122800 [exp]	23.97	0.9255
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G355500 [exp]	26.45	0.9206
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.019G043300 [exp]	29.39	0.9291	RPOD1.1
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Potri.004G129200 [exp]	33.67	0.9247

Compare expression of checked genes

Potri.018G040301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.