Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16180 559 / 0 Major facilitator superfamily protein (.1) AT1G52190 558 / 0 Major facilitator superfamily protein (.1) AT1G69870 360 / 4e-117 NRT1.7 nitrate transporter 1.7 (.1) AT5G11570 340 / 7e-111 Major facilitator superfamily protein (.1) AT3G47960 342 / 1e-109 Major facilitator superfamily protein (.1) AT5G62680 338 / 1e-108 Major facilitator superfamily protein (.1) AT1G68570 330 / 2e-105 Major facilitator superfamily protein (.1) AT1G18880 324 / 3e-103 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G54140 317 / 9e-101 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G27080 313 / 3e-99 NRT1.6 nitrate transporter 1.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041600 [exp] 804 / 0 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 794 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 791 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 790 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 737 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 721 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 615 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 517 / 1e-178 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 516 / 4e-178 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 543 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 526 / 0 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 449 / 1e-151 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 397 / 2e-131 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 361 / 2e-118 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10037221 [exp] 348 / 4e-112 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036669 [exp] 343 / 2e-110 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10036705 [exp] 343 / 5e-110 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10041466 [exp] 338 / 5e-108 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 333 / 1e-106 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.018G040400.1 pacid=42801592 polypeptide=Potri.018G040400.1.p locus=Potri.018G040400 ID=Potri.018G040400.1.v4.1 annot-version=v4.1 ATGGAAGATCCTTTAGATCATAAAGGGAAAATCAAAGAGCCGCTCTTGAGCAGCAGTACTACTAAGGGTGGCTTAAGAGCCTTGATATTTATCATAGTAA ATGAGGCATTTGAGAGGCTGGCAAATTATGGGCTTTCGACAAACCTGATATTGTATTTGACAAGAGAGTATGGTATTGATGCTGTCAATGGTGCACAAAT ACTCTACCTTCATTCAGCTGCCACGAGTTTTACGCCATTCATCGGTGCTTTTCTTGCGGATACCTATGTGGGACGGTATTTCATGATCGGCTTTGGATGT ATTGCTTGCCTTCTGGGCGTGATTCTACTATGGTTAACAACTATAATTCCAGGAACAAGACCACCTCCTTGTGTCCAATTTCATGACAGTTGCGAATCCG CATCGACATTGCAGCTTCTGCTTTTATATTCTTCTTTAGGTCTCATGGCCATTGGAGCTGGCGGCATAAGATCATCGTCCTTGGCCTTTGGTGCTGAGCA GTTGGGCAAGAGGGACACCCTCAAACGTGCTGGAATATTAGAGAGCTTCTTCCGCTGGTACTATGCGACAGTCTCGGTTGCGTTGTTCCTTGCCATGACC TGTATTTTATACATTCAAGATAACATGGGGTGGAAGGTGGGTTTTGGAATTCCTGTGGTGCTCATGATCCTGTCAACTCTTTCATTCTTCTTAGCTTCTC CCATTTATGTCAAGTCAAAGGCTAAGGCAGGCTGGCTGGATGGATTTGCTCGAGTTTTGGTGGCATCCTTTAGAAATAGAAGTATCAAATTATCATCCCA AGTCAAAGATGATGTGTATCATCATAGGAAAGGATCAAGACTTCTCGTCCCATCTGAAAAATTAAGGTTTCTAAACAAAGCTTGCGTCATTAGAAATCCT AAAGAAGACTTGATCCCAGATGGAAGAGCTTCAAATCCATGGAGTCTTTGTACAGTAGATGAAGTAGAAGAGCTTAAATCACTGATCAAGGTAATCCCAA TATGGTCCACAGGGGTCTTGATGTCTATAAATGTACTCCAACACTCTTTTATAGTCCTCCAGGCATCTACTATGGACCGGCACATTACTTCAAAATTTCA AGTTCCTGCTGGCTCCTTCACTGCATTTCAGTTATTTTCTTCGGTAATATGGATTGCTCTCTATGATCGTGTAGCCATCCCTCTAGCATCAAAAATCAGG GGAAAACCAACTCGTCTCGGCTTAAAACAAAGAATAGGAATTGGCATCCTATCATCCTCTGCTGCCATGGCAGCATTGGCAATTATAGAGAGTGTTCGGC GAAAAACTGCGATCAAAGAAGGATTTTCTGATGACCCTAATTCCGTTCTGCACATTTCAGCATTGTGGTTATTGCTATACTTTTTCATAACCGGATTTGC TGAGGCTTTCTGTGGTATTGGACAGAATGAGTTCTTCTATACTGAATTGCCCAAGAGCATGTCTAGTGTAGCCTCCAATCTGTTCGAGATGGGACTGTCA GTTTCAAACTTGATAGCGAGTTTGCTAGTAACTATTGTCCGCAACTTCTTCAAGGGAAACGATCAGGAGAGTTGGCTTTCAAGCAACATCAACAAGGGAC ATTACGATTACTATTATTGGCTTCTTGCTGGTTTGAGTTTGGCTAACTTCATATATTATCGTGCTTGTAGCAAGGCATATGGTCCTTGCAAGGGACAAGA AGGCAATGCTACTGATGGAGGGGAAGCCTTGACAGATGAGGATTAG
AA sequence Show only first row Show all	>Potri.018G040400.1 pacid=42801592 polypeptide=Potri.018G040400.1.p locus=Potri.018G040400 ID=Potri.018G040400.1.v4.1 annot-version=v4.1 MEDPLDHKGKIKEPLLSSSTTKGGLRALIFIIVNEAFERLANYGLSTNLILYLTREYGIDAVNGAQILYLHSAATSFTPFIGAFLADTYVGRYFMIGFGC IACLLGVILLWLTTIIPGTRPPPCVQFHDSCESASTLQLLLLYSSLGLMAIGAGGIRSSSLAFGAEQLGKRDTLKRAGILESFFRWYYATVSVALFLAMT CILYIQDNMGWKVGFGIPVVLMILSTLSFFLASPIYVKSKAKAGWLDGFARVLVASFRNRSIKLSSQVKDDVYHHRKGSRLLVPSEKLRFLNKACVIRNP KEDLIPDGRASNPWSLCTVDEVEELKSLIKVIPIWSTGVLMSINVLQHSFIVLQASTMDRHITSKFQVPAGSFTAFQLFSSVIWIALYDRVAIPLASKIR GKPTRLGLKQRIGIGILSSSAAMAALAIIESVRRKTAIKEGFSDDPNSVLHISALWLLLYFFITGFAEAFCGIGQNEFFYTELPKSMSSVASNLFEMGLS VSNLIASLLVTIVRNFFKGNDQESWLSSNINKGHYDYYYWLLAGLSLANFIYYRACSKAYGPCKGQEGNATDGGEALTDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16180			Major facilitator superfamily ...		Potri.018G040400 [exp]	0	1
AT3G05390			unknown protein		Potri.004G231100 [exp]	3.16	0.9068
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026032 [exp]	4.69	0.9164
AT4G25250			Plant invertase/pectin methyle...		Potri.015G128900 [exp]	5.74	0.9146
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026100 [exp]	7.87	0.9153
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026200 [exp]	10.95	0.9128
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G025966 [exp]	14.14	0.9100
AT2G43870			Pectin lyase-like superfamily ...		Potri.007G144100 [exp]	15.29	0.9114
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	16.09	0.9110
AT4G37710			VQ motif-containing protein (....		Potri.007G006200 [exp]	17.60	0.9126
AT2G45750			S-adenosyl-L-methionine-depend...		Potri.015G139000 [exp]	19.89	0.8987

Compare expression of checked genes

Potri.018G040400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.