Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28880 590 / 0 CKL3 casein kinase I-like 3 (.1) AT4G28860 575 / 0 CKL4 casein kinase I-like 4 (.1.2) AT5G57015 509 / 4e-180 CKL12 casein kinase I-like 12 (.1) AT4G26100 505 / 3e-178 CKL1, CK1 casein kinase 1 (.1) AT1G72710 500 / 4e-176 CKL2 casein kinase 1-like protein 2 (.1) AT1G03930 491 / 2e-172 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 490 / 6e-172 CKL7 casein kinase I-like 7 (.1) AT3G23340 489 / 6e-172 CKL10 casein kinase I-like 10 (.1) AT4G28540 490 / 1e-171 CKL6, PAPK1 casein kinase I-like 6 (.1) AT5G43320 486 / 3e-170 CKL8 casein kinase I-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239900 [exp] 832 / 0 AT4G28880 594 / 0.0 casein kinase I-like 3 (.1) Potri.018G084500 [exp] 603 / 0 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1) Potri.003G043500 [exp] 512 / 1e-180 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 509 / 1e-179 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 509 / 1e-179 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 508 / 4e-179 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.005G226900 [exp] 498 / 2e-175 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 495 / 5e-174 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 489 / 1e-171 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043233 [exp] 596 / 0 AT4G28880 614 / 0.0 casein kinase I-like 3 (.1) Lus10011113 [exp] 582 / 0 AT4G28880 596 / 0.0 casein kinase I-like 3 (.1) Lus10037621 [exp] 509 / 9e-180 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006879 [exp] 508 / 3e-179 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 504 / 4e-178 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10027628 [exp] 506 / 5e-178 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10021175 [exp] 497 / 1e-174 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 494 / 2e-173 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 492 / 7e-173 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 488 / 2e-171 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G041000.2 pacid=42802153 polypeptide=Potri.018G041000.2.p locus=Potri.018G041000 ID=Potri.018G041000.2.v4.1 annot-version=v4.1 ATGAAAATGGAGAGAATTATAGGAGAGAAGTACAAATTGGGTCGCAAAATTGGAAGCGGATCCTTTGGCGAAATCTTTCTCGCTACTCACATTCAATCTG GTGAAATCGTTGCTGTCAAAATTGAAAATAGGAGTGCAAAGCATCCGCAGTTACTTTACGAAGCCAAACTGTATAAGATTCTTCGTGGTGGAAGTGGTGT TGCGAATATAAAATGGTGTGGAGTAGACGGAGGAGATAATGTATTAGTAATTGATTTGCTAGGTCCGAGTCTCGAGGACTTGTTTGTGTACTGTGGGAGG AAGTTTTCCCTTAAAACGGTGCTAATGTTGGCTGATCAGATGATTGCGAGGATTGAGTACATGCATACGAAGGGATTCTTGCATAGGGACATTAAACCGG ATAATTTTCTCATGGGTCTTGGAAGGAAAGCTAATCAGGTCTATGTCATTGATTTTGGGCTTGCAAAAAGATATAGGGATACAACAACACACCAACATAT TCCTTACAGAGAGAACAAAAACTTAACAGGAACTGCCCGGTATGCAAGTTGCAATACTCATCTAGGAATTGAGCAGAGCTGTCGAGATGATCTGGAGTCC ATTGGCTATGTTCTTTTATACTTTTTGAGAGGAAGCCTTCCATGGCAGGGTCTGAAAGCTGCAACGAAGAAGCAAAAGTACAATAAAATATGCGAGAAGA AGTTATCAACTCCAATTGAGGTACTGTGCAAGTCGCATCCTGTGGAGTTTGCTTCTTACTTCCATTATTGCCACTCTTTAACATTTGACCAAAGACCTGA TTATGGATTTCTGAAGCGCCTCTTTCATGTCTTGTTTACTCGAGAAGGATTTGAGTTTGATTATGTTTTTGACTGGACCATCCTGAAGTACAAGCAGACA CAGAGAACAAAGCCACCAGCTAAATCACCCGACTTGCAGCCGAATTCTAGAGTGACAGGCAGTCGAGCAATGGCTATGGATCTTGATAAGGGTAAAGGGG TCAATGGTGCTTCTTATTCTGCTGAGGTTACTGATCACAGAGGATCAAATAAAGTTGCTTGTCCAGATGCTCATATGCAGTTTGGCTCGTCACTTTCTCG GAATTTAACTGCTGATAATCCAATTGACAAACATAATATGAACAATGTCTCAATGCCGTCAACTTCTTTTGCTCCACCCAGTGCATCCAGAAGGGATTTT ATGAAACTAGATGGCTCAACTGATGCTGTGAACATTGGTCGTGGGGTTGGGAACAGAGCTGGTGCTTCAAGTAGGTTGATGAGAATTTCTTCAGCCAAGC AATTGCTGTAA
AA sequence Show only first row Show all	>Potri.018G041000.2 pacid=42802153 polypeptide=Potri.018G041000.2.p locus=Potri.018G041000 ID=Potri.018G041000.2.v4.1 annot-version=v4.1 MKMERIIGEKYKLGRKIGSGSFGEIFLATHIQSGEIVAVKIENRSAKHPQLLYEAKLYKILRGGSGVANIKWCGVDGGDNVLVIDLLGPSLEDLFVYCGR KFSLKTVLMLADQMIARIEYMHTKGFLHRDIKPDNFLMGLGRKANQVYVIDFGLAKRYRDTTTHQHIPYRENKNLTGTARYASCNTHLGIEQSCRDDLES IGYVLLYFLRGSLPWQGLKAATKKQKYNKICEKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFHVLFTREGFEFDYVFDWTILKYKQT QRTKPPAKSPDLQPNSRVTGSRAMAMDLDKGKGVNGASYSAEVTDHRGSNKVACPDAHMQFGSSLSRNLTADNPIDKHNMNNVSMPSTSFAPPSASRRDF MKLDGSTDAVNIGRGVGNRAGASSRLMRISSAKQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	0	1
AT5G24450			Transcription factor IIIC, sub...		Potri.007G145000 [exp]	1.41	0.9143
					Potri.010G026350 [exp]	4.24	0.8855
AT5G48440			FAD-dependent oxidoreductase f...		Potri.014G177300 [exp]	5.38	0.8157
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.014G195300 [exp]	5.91	0.8757
					Potri.008G139375 [exp]	6.32	0.8861
AT5G21222			protein kinase family protein ...		Potri.014G161400 [exp]	6.32	0.8380
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.008G179500 [exp]	6.63	0.8620
AT4G16360			5'-AMP-activated protein kinas...		Potri.014G167400 [exp]	6.92	0.8289
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	7.21	0.8239
AT3G52260			Pseudouridine synthase family ...		Potri.008G042000 [exp]	8.60	0.7823

Compare expression of checked genes

Potri.018G041000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.