Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 562 / 0 Major facilitator superfamily protein (.1) AT3G16180 551 / 0 Major facilitator superfamily protein (.1) AT1G69870 377 / 1e-123 NRT1.7 nitrate transporter 1.7 (.1) AT5G11570 361 / 3e-119 Major facilitator superfamily protein (.1) AT5G62680 350 / 4e-113 Major facilitator superfamily protein (.1) AT1G18880 348 / 8e-113 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G27080 340 / 7e-110 NRT1.6 nitrate transporter 1.6 (.1) AT3G47960 336 / 2e-107 Major facilitator superfamily protein (.1) AT1G68570 330 / 2e-105 Major facilitator superfamily protein (.1) AT5G01180 321 / 3e-102 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040500 [exp] 1120 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 1105 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 1067 / 0 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 786 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 746 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 731 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 604 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 540 / 0 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 535 / 0 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 558 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 535 / 0 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 464 / 1e-157 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 437 / 7e-147 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 403 / 1e-134 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10037221 [exp] 372 / 4e-121 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 365 / 2e-118 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 357 / 5e-116 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10042182 [exp] 352 / 8e-114 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10036669 [exp] 350 / 5e-113 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.018G041400.1 pacid=42800936 polypeptide=Potri.018G041400.1.p locus=Potri.018G041400 ID=Potri.018G041400.1.v4.1 annot-version=v4.1 ATGATCACAGAGCCACTCTTGAGCAGCCCGAAGGGTGGCATAAGAGCCTTGTTTTTCATCATAGCAAATGAGGCACTGGAGAGGCTAGCAAGTTTTGGGC TATCAACAAATATGATACTGTATTTGACTAGAGAGTATGGTATGGATGCAGCTAGCGGTGCCCAAATACTCTTCCTCTACTCAGCTGCTGGGAATTTCAT GCCAATTATTGGGGCTTTTCTTGCTGATACATATGTGGGTCGATACCCGATGATCGGCTTTGGATGTATTGCGAGCCTTCTGGGAATGGTTCTATTGTGG TTGACAACAATAATTCCTGGGGCAACGGTGCCTTCTTGCGCCCAATTTAGTAGCATATGCAATAACGACGCGACGACACCACAGCTTTTGTTTCTATATT TTTGCTTAGGCCTTATGTCTATCGGAGCTGGTGGCATAAGATCATGCTCCCTGGCCTTTGGTGCTGATCAATTGAGCAAGAGGGACAGCCTTAAACATGC TGGAATATTAGAGAGCTTCTTCAGTTGGTACTATGTTATATCATCAGCTTCTGTATTTATTTCCATGACTTGTGTGGTTTACATTCAAGAGGCCATGGGC TGGAAGGTGGGTTTCGGAGTTCCTGTGGTTCTCATGATCCTGTCAACTCTTTCGTTCTTCTTGGCTTCTTCCATTTATGTCAAGCCAAAGGCTAAGGCAA GCTGGCTCATCGGATTTGCTCGAGTTCTCGTGGCCTCCTTTAGAAAGAGAAGGATTGAATTATCTTCACTAGACACGGATGAGCTGTATCATCATAGGAA GGGATCCGCGCTTGTCGTGCCAAGTGAAAGAATAAGGTTTCTCAACAAAGCTTGTGTTATTAAGAATCCTGAAGAAGACTTGATGCCAGATGGAAGAGCT TCAGATCCATGGAGTCTTTGTACAGTAGATCAAGTAGAAGAGCTGAAAGCACTAATAAAGGTAATCCCAATATGGTCGACAGGGGTGTTGGTGTCTGTAA ATGTCTGTCAAAACTCTTTCCTATTACTCCAGGCATCCACTATGAACCGACATATCACTTCGAAATTTGAAATTCCTGCTGGATCATTCTACGCATTTCT GTTGCTCTCTGCAACAATGTGGATTGCTCTCTACGATCGCGTAATCATCCCTCTAGCATCAAAAATCACGGGAAAACCAACACGTCTCGGCTTGAAACAG AAAATAGGAATCGGGATTCTGGTCTCGGCTGCTTCCATGGCAGTACTGGCAATTATAGAGAGGGTGCGACGAGAAATTGCAATCAGGGAAGGAATTTCAG ATATTCCTGACGCGGTTACGCACATGTCTGCAATGTGGTTATTGCCATTCTATTTCTTACTTGGATTTTCTGAGGCTATGAATGGTGTTGGACTGAATGA GTTCTTCTACACTGAATTGCCTAAAAGCATGTCTAGCGTGGCCTCGAATCTTTTTAGTATTGGACTGTCTGCTGCAAGCTTGGTGGCCAGTTTTATAGTA AGTAATGTTCGTGGGTTTATTGGTGAAGCAAATCAAGAGAGTTGGGTTTCAAGCAACATCAACAAAGGACATTATGATTACTATTACTGGCTGCTTTCTA GTTTAGGTTTTGCTAACTTCATTTATTATCTTGCTTGTAGCAAGGCTTATGGTCCTTGTAAGGGGGGACAAAGGGGCATTACTGGAGATGTTAGGGAAGG ATTGATTGATGATGATGATGATGATGATGATGATTATGATGATGATGTAGTTTAA
AA sequence Show only first row Show all	>Potri.018G041400.1 pacid=42800936 polypeptide=Potri.018G041400.1.p locus=Potri.018G041400 ID=Potri.018G041400.1.v4.1 annot-version=v4.1 MITEPLLSSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILFLYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLGMVLLW LTTIIPGATVPSCAQFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGADQLSKRDSLKHAGILESFFSWYYVISSASVFISMTCVVYIQEAMG WKVGFGVPVVLMILSTLSFFLASSIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSERIRFLNKACVIKNPEEDLMPDGRA SDPWSLCTVDQVEELKALIKVIPIWSTGVLVSVNVCQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKITGKPTRLGLKQ KIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGFSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIV SNVRGFIGEANQESWVSSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGPCKGGQRGITGDVREGLIDDDDDDDDDYDDDVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52190			Major facilitator superfamily ...		Potri.018G041400 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Potri.018G040500 [exp]	1.41	0.9994
AT1G52190			Major facilitator superfamily ...		Potri.018G041500 [exp]	3.87	0.9890
AT1G52190			Major facilitator superfamily ...		Potri.018G041600 [exp]	5.47	0.9643
AT1G78860			D-mannose binding lectin prote...		Potri.011G110200 [exp]	6.16	0.8893
AT4G34950			Major facilitator superfamily ...		Potri.005G112400 [exp]	7.93	0.9422
AT1G65820			microsomal glutathione s-trans...		Potri.017G140900 [exp]	7.93	0.9457
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Potri.005G187600 [exp]	8.00	0.9446
AT3G03270			Adenine nucleotide alpha hydro...		Potri.017G144301 [exp]	12.72	0.8587
AT4G23260		CRK18	cysteine-rich RLK (RECEPTOR-li...		Potri.005G014950 [exp]	12.96	0.8740
AT4G38260			Protein of unknown function (D...		Potri.005G252250 [exp]	13.26	0.8994

Compare expression of checked genes

Potri.018G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.