Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 561 / 0 Major facilitator superfamily protein (.1) AT3G16180 551 / 0 Major facilitator superfamily protein (.1) AT5G11570 385 / 2e-128 Major facilitator superfamily protein (.1) AT1G69870 370 / 1e-120 NRT1.7 nitrate transporter 1.7 (.1) AT1G18880 344 / 3e-111 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G62680 345 / 5e-111 Major facilitator superfamily protein (.1) AT1G27080 331 / 5e-106 NRT1.6 nitrate transporter 1.6 (.1) AT3G47960 330 / 4e-105 Major facilitator superfamily protein (.1) AT1G68570 326 / 7e-104 Major facilitator superfamily protein (.1) AT5G01180 314 / 1e-99 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041400 [exp] 1105 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 1102 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 1066 / 0 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 784 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 742 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 725 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 600 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 531 / 0 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 525 / 0 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 553 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 536 / 0 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 459 / 8e-156 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 436 / 2e-146 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 400 / 2e-133 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10037221 [exp] 357 / 2e-115 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 350 / 1e-112 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 348 / 1e-112 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036669 [exp] 347 / 9e-112 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10038618 [exp] 339 / 2e-109 AT1G52190 377 / 5e-124 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.018G041500.2 pacid=42801976 polypeptide=Potri.018G041500.2.p locus=Potri.018G041500 ID=Potri.018G041500.2.v4.1 annot-version=v4.1 ATGATCACAGAGCCACTCTTGAGCAGCCCGAAGGGTGGCATAAGAGCCTTGTTTTTCATCATAGCAAATGAGGCACTGGAGAGGCTAGCAAGTTTTGGGC TATCAACAAATATGATACTGTATTTGACTAGAGAGTATGGTATGGATGCAGCTAGCGGTGCCCAAATACTCTTCCTCTACTCAGCTGCTGGGAATTTCAT GCCAATTATTGGGGCTTTTCTTGCTGATACATATGTGGGTCGATACCCGATGATCGGCTTTGGATGTATTGCGAGCCTTCTGGGAATGGTTCTATTGTGG TTGACAACAATAATTCCTGGGGCAACGGTGCCTTCTTGCGCCAAATTTAGTAGCATATGCAATAACGACGCGACGACACCACAGCTTTTGTTTCTATATT TTTGCTTAGGCCTGATGTCTATCGGAGCTGGTGGCATAAGATCATGCTCCCTGGCCTTTGGTGCTGATCAATTGAGCAAGAGGGACAGCCTTAAACATGC TGGAATATTAGAGAGCTTCTTCAGTTGGTACTATGTTATATCCTCAGCTTCTGTATTTATTTCCATGACTTGTGTGGTATACATTCAAGAGGCCATGGGC TGGAAGGTGGGTTTCGGAGTTCCTGTGGTTCTCATGATCCTGTCAACTCTTTCGTTCTTCTTGGCTTCTCCCATTTATGTCAAGCCAAAGGCTAAGGCAA GCTGGCTCATCGGATTTGCTCGAGTTCTCGTGGCCTCCTTTAGAAAGAGAAGGATTGAATTATCTTCCCTAGACACGGATGAGCTGTATCATCATAGGAA GGGATCCGCGCTTGTCGTGCCAAGTGAAAGAATAAGGTTACTCAACAAAGCTTGTGTTATTAAGAATCCTGAAGAAGACTTGATGCCTGATGGAAGAGCT TCAGATCCATGGACTCTTTGTACAGTAGATCAAGTAGAAGAGCTGAAGGCACTAATAAAGGTAATCCCAATATGGTCGACAGGGGTGTTGGTGTCTGTAA ATGTCTGTCAAAACTCTTTCCTATTACTCCAGGCATCCACTATGAACCGACATATCACTTCGAAATTTGAAATTCCTGCTGGATCATTCTATGCATTTCT GTTGCTCTCTGCAACAATGTGTATTGCTCTCTACGATCGCGTAATCATCCCTCTAGCATCAAAGGTCAGGGGAAAACCAACACGTCTCGGCTTGAAACAG AAAATAGGAATTGGGATTCTGGTCTCGGCTGCTTCCATGGCAGTCCTGGCAATTATAGAGAGGGTGCGACGAGAAATTGCAATCAGGGAAGGAATTTCAG ATATTCCGGACGCGGTTACGCACATGTCTGCAATGTGGTTATTGCCATTCTATTTCTTACTTGGATTTTCTGAGGCTATGAATGGTGTTGGACTGAATGA GTTCTTCTACACTGAATTGCCTAAAAGCATGTCTAGCGTGGCCTCGAATCTTTTTAGTATTGGACTCTCTGCTGCAAGCTTGGTGGCCAGTTTTATAGTA AGTAATGTTCGTGGGTTTATTCGTGAAGCAAATCAAGAGAGTTGGGTTTCAAGCAACATCAACAAAGGACATTATGATTACTATTACTGGCTGCTTTCTA GTTTGGGTTTTGCTAACTTCATTTATTATCTTGCTTGTAGCAAGGCTTATGGTCCTTGTAAGGGGGGACAAAGGGGCATTACTGGAGATGTTAGGGAAGG ATTGATTGATGATGATGATGATGATGATGATGATTATGATGATGATGTAGTTTAA
AA sequence Show only first row Show all	>Potri.018G041500.2 pacid=42801976 polypeptide=Potri.018G041500.2.p locus=Potri.018G041500 ID=Potri.018G041500.2.v4.1 annot-version=v4.1 MITEPLLSSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILFLYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLGMVLLW LTTIIPGATVPSCAKFSSICNNDATTPQLLFLYFCLGLMSIGAGGIRSCSLAFGADQLSKRDSLKHAGILESFFSWYYVISSASVFISMTCVVYIQEAMG WKVGFGVPVVLMILSTLSFFLASPIYVKPKAKASWLIGFARVLVASFRKRRIELSSLDTDELYHHRKGSALVVPSERIRLLNKACVIKNPEEDLMPDGRA SDPWTLCTVDQVEELKALIKVIPIWSTGVLVSVNVCQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMCIALYDRVIIPLASKVRGKPTRLGLKQ KIGIGILVSAASMAVLAIIERVRREIAIREGISDIPDAVTHMSAMWLLPFYFLLGFSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIV SNVRGFIREANQESWVSSNINKGHYDYYYWLLSSLGFANFIYYLACSKAYGPCKGGQRGITGDVREGLIDDDDDDDDDYDDDVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52190			Major facilitator superfamily ...		Potri.018G041500 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Potri.018G041600 [exp]	1.73	0.9927
AT1G52190			Major facilitator superfamily ...		Potri.018G040500 [exp]	3.46	0.9927
AT1G52190			Major facilitator superfamily ...		Potri.018G041400 [exp]	3.87	0.9890
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030000 [exp]	6.48	0.9546
AT4G34950			Major facilitator superfamily ...		Potri.005G112400 [exp]	7.34	0.9432
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Potri.005G187600 [exp]	8.48	0.9441
AT2G39510			nodulin MtN21 /EamA-like trans...		Potri.008G051500 [exp]	9.48	0.9415
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.009G112061 [exp]	10.24	0.9124
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.012G120676 [exp]	12.40	0.9140
AT1G65820			microsomal glutathione s-trans...		Potri.017G140900 [exp]	14.69	0.9195

Compare expression of checked genes

Potri.018G041500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.