Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 590 / 0 Major facilitator superfamily protein (.1) AT3G16180 585 / 0 Major facilitator superfamily protein (.1) AT5G11570 395 / 2e-132 Major facilitator superfamily protein (.1) AT1G69870 390 / 1e-128 NRT1.7 nitrate transporter 1.7 (.1) AT5G62680 366 / 3e-119 Major facilitator superfamily protein (.1) AT1G18880 363 / 2e-118 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G27080 358 / 1e-116 NRT1.6 nitrate transporter 1.6 (.1) AT3G47960 344 / 2e-110 Major facilitator superfamily protein (.1) AT1G68570 339 / 5e-109 Major facilitator superfamily protein (.1) AT1G62200 330 / 8e-106 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041400 [exp] 1120 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 1119 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 1117 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 815 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 773 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 753 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 640 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 554 / 0 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 552 / 0 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 588 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 561 / 0 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 482 / 2e-164 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 446 / 3e-150 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 405 / 2e-135 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10037221 [exp] 385 / 2e-126 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 380 / 3e-124 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 372 / 1e-121 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036669 [exp] 363 / 5e-118 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 360 / 4e-117 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.018G041600.1 pacid=42801613 polypeptide=Potri.018G041600.1.p locus=Potri.018G041600 ID=Potri.018G041600.1.v4.1 annot-version=v4.1 ATGATCACAGAGCCACTCTTGAGCAGCCCGAAGGGTGGCATAAGAGCCTTGTTTTTCATCATAGCAAATGAGGCACTGGAGAGGCTAGCAAGTTTTGGGC TATCAACAAATATGATACTGTATTTGACTAGAGAGTATGGTATGGATGCAGCTAGCGGTGCCCAAATACTCTTCCTCTACTCAGCTGCTGGGAATTTCAT GCCAATTATTGGGGCTTTTCTTGCTGATACATATGTGGGTCGATACCCGATGATCGGCTTTGGATGTATTGCGAGCCTTCTGGGAATGGTTCTATTGTGG TTGACAACAATAATTCCTGGAGCAAGGGTGCCTTCTTGCGCCCAATTTAGTAGCAATTGCACTAACGACGCGACGACACCACAGCTTTTGTTTCTATATT TATGCTTAGGCCTTATGTCTATCGGTGCTGGAGGCATAAGATCATGCTCCCTGGCCTTTGGTGCTGATCAATTGAGCAAGAGGGACAGCCTTAAACATGC TGGAATATTAGAGAGCTTCTTCAGTTGGTACTATGTTACATCCTCAGCTTCTGTATTTATTTCCATGACTTGTATAGTTTACATTCAAGACACCATGGGC TGGAAGGTGGGTTTCGGAGTTCCTGTGGTTCTCATGATCCTGTCAACTCTTTCGTTCTTCTTGGCTTCTCCCATTTATGTCAAGCCAAAGGTTAAGGCAA GCTGGCTCATCGGATTTGCTCGAGTTCTCGTGGCCTCCTATAGAAAGAGAAGGATTGAATTATCATGGCTAGACACGGATGAGCTGTATCATCATAGGAA GGGATCCGCGCTTGTCGTGCCAAGTGAAAGAATAAGGTTTCTAAACAAAGCTTGTGTTATTAAGAATCCTGAAGAAGACTTGATGCCAGATGGAAGAGCT TCAGATCCATGGACTCTTTGTACAGTAGATCAAGTAGAAGAGCTAAAAGCACTAATAAAGGTAATCCCAATATGGTCGACAGGGGTGTTGGTGTCTGTAA ATGTCTGTCAAAACTCTTTCCTATTACTCCAGGCATCCACTATGAACCGACATATCACTTCGAAATTTGAAATTCCTGCTGGATCATTCTATGCATTTCT GTTGCTCTCTGCAACAATGTGGATTGCTCTCTACGATCGCGTAATCATCCCTCTAGCATCAAAGGTCAGGGGAAAACCAACACGTCTCGGCTTGAAACAG AAAATAGGAATTGGGATTCTGGTCTCGGCTGCTTCCATGGCAGTACTGGCAATTATAGAGAGGGTGCGACGAGAAACTGCAATCAGGGAAGGAATTTCAG ATATTCCTGACGCGGTTACGCACATGTCTGCAATGTGGTTATTGCCATTTTATTTCTTACTTGGATTTTCTGAGGCTATGAATGGTGTTGGACTGAATGA GTTCTTCTACACTGAATTGCCTAAAAGCATGTCTAGCGTGGCCTCGAATCTTTTTAGTATTGGACTGTCTGCTGCAAGCTTGGTGGCCAGTTTTATAGTA AGTAATGTTCGTGGGTTTATTAGTGAAGCAAATCAAGAGAGTTGGGTTTCAAGCAACATCAACAAAGGACATTATGATTACTATTACTGGCTGCTTTATA GTTTGGGTTTTGCTAACTTCATTTATTATCTTGCTTGTAGCAAGGCTTATGGTCCTTGTAAGGGGGGACAAAGGGGCATTACTGGAGATGCTAGGGAAGG ATTGATTGATGATGATGATGATGATGATGATGATTATGATGATGATGTAGTTTAA
AA sequence Show only first row Show all	>Potri.018G041600.1 pacid=42801613 polypeptide=Potri.018G041600.1.p locus=Potri.018G041600 ID=Potri.018G041600.1.v4.1 annot-version=v4.1 MITEPLLSSPKGGIRALFFIIANEALERLASFGLSTNMILYLTREYGMDAASGAQILFLYSAAGNFMPIIGAFLADTYVGRYPMIGFGCIASLLGMVLLW LTTIIPGARVPSCAQFSSNCTNDATTPQLLFLYLCLGLMSIGAGGIRSCSLAFGADQLSKRDSLKHAGILESFFSWYYVTSSASVFISMTCIVYIQDTMG WKVGFGVPVVLMILSTLSFFLASPIYVKPKVKASWLIGFARVLVASYRKRRIELSWLDTDELYHHRKGSALVVPSERIRFLNKACVIKNPEEDLMPDGRA SDPWTLCTVDQVEELKALIKVIPIWSTGVLVSVNVCQNSFLLLQASTMNRHITSKFEIPAGSFYAFLLLSATMWIALYDRVIIPLASKVRGKPTRLGLKQ KIGIGILVSAASMAVLAIIERVRRETAIREGISDIPDAVTHMSAMWLLPFYFLLGFSEAMNGVGLNEFFYTELPKSMSSVASNLFSIGLSAASLVASFIV SNVRGFISEANQESWVSSNINKGHYDYYYWLLYSLGFANFIYYLACSKAYGPCKGGQRGITGDAREGLIDDDDDDDDDYDDDVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52190			Major facilitator superfamily ...		Potri.018G041600 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Potri.018G041500 [exp]	1.73	0.9927
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030000 [exp]	2.44	0.9825
AT1G52190			Major facilitator superfamily ...		Potri.018G040500 [exp]	5.00	0.9710
AT1G52190			Major facilitator superfamily ...		Potri.018G041400 [exp]	5.47	0.9643
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029700 [exp]	5.65	0.9564
AT2G39510			nodulin MtN21 /EamA-like trans...		Potri.008G051500 [exp]	6.48	0.9583
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.009G112061 [exp]	8.94	0.9198
AT4G34950			Major facilitator superfamily ...		Potri.005G112400 [exp]	10.48	0.9354
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029000 [exp]	10.81	0.9327
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Potri.005G187600 [exp]	12.00	0.9342

Compare expression of checked genes

Potri.018G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.