Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 561 / 0 Major facilitator superfamily protein (.1) AT3G16180 540 / 0 Major facilitator superfamily protein (.1) AT1G69870 345 / 3e-111 NRT1.7 nitrate transporter 1.7 (.1) AT1G68570 318 / 5e-101 Major facilitator superfamily protein (.1) AT1G62200 317 / 1e-100 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G54140 316 / 2e-100 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G27080 312 / 4e-99 NRT1.6 nitrate transporter 1.6 (.1) AT5G62680 312 / 9e-99 Major facilitator superfamily protein (.1) AT2G02040 311 / 2e-98 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G47960 307 / 2e-96 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041800 [exp] 835 / 0 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 734 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 733 / 0 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 730 / 0 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 730 / 0 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 697 / 0 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 583 / 0 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 506 / 9e-175 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 488 / 5e-167 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035860 [exp] 540 / 0 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 515 / 4e-177 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 451 / 1e-152 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037896 [exp] 384 / 2e-126 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10037221 [exp] 355 / 7e-115 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 352 / 2e-113 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036669 [exp] 331 / 7e-106 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 329 / 2e-105 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10038616 [exp] 327 / 3e-105 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10030947 [exp] 318 / 3e-101 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.018G041700.1 pacid=42801293 polypeptide=Potri.018G041700.1.p locus=Potri.018G041700 ID=Potri.018G041700.1.v4.1 annot-version=v4.1 ATGGATTGCTCATCAGAACAAAGACAGATGATCACAGAACCACTCTTGAGTAACGGAAAGGGTGGCATCAGAACCATACCTTTCATCCTAGCAAATGAGG CATTTGAGAGGCTAGCAAGTTTTGGGCTATCGACAAATATGATTATGTATTTGACTAGAGAATATGGCATGGATGCTGCTCAAGGTGCTCAACTATTGTT CCTTTTCTCATCTGCCACGAATTTCACACCAATTCTGGGGGCTGTCCTCGCTGATTCTTATGTGGGTCGGTATAGGATGATAGGTTTTGGGTGTATGGCT AGCCTTTTGGGGATGGTTCTATTATGGCTAACAACTTTTCCTGAAGCAAGACAGCCTCTTTGTGTCCACTTCAGTCACAGTTGCAATTCCAGAAGCACGT TACAGCTTGTGCATTTATATACAGCTTTTGGCTTCATGGCCATAGGAGCTGGTGGCATTAGATCGTCTTCCTTGGCTTTTGGTGCTGATCAATTGAGCAT CACACACAATCTTCAACGTGCTAGAATAAGGGAGAGCTTCTTCAGATGGTATTATGTTACAGTCACGGCATCGGTATTTGTTGCTATGACCTGTGTTGTA TACATCCAGGAGAACATGGGGTGGATGGTGGGTTTTGGAGTTCCTGTGGTGCTCATGATTCTGTCAGCTCTTTCATTCTCCTTGGCTTCTCCCTTTTATG TGAAGTCGAAGCCTAAGGCAAGCTGGATTACTGGGTTGGCCCAAGTTGTTGTTGCTTCCTTCAGAAATAGAAGTGTCGAATTATCTACCCAAGCCACAGT TGAGGTGCGCTATCATACAACGGGATCAATTCTTCCAGTGCCAAGTAAAAGATTGAGGTTTTTCAACAAAGCTTGCATTGTTGGAAATCCTCAAGTAGAC GTGACTCCAGATGGAAATGCTTTGGATCCATGGAGTCTTTGTACAGTAGATCAAGTAGAAGATCTGAAAACACTGATAAAGGTAATCCCAATATGGTCAT CAGGAATGTTGATGTTCGTGAATGTAAGCCAAGGATCTTTTATAGTGCTCCAGGTATCCACCATGGACCGACACATCACTTCGAAATTTGAAATTCCTGC TGCCACCTTCCTTTCATTTGCAGTTCTTGTTATAGTATTGTGGGTTGCTCTCTATGATCGCATAATTATTCCCTTGGTTTCGAAAATCAAGGGACAACCA GTTCGTCTCGGCTTGAAAAAAAGAATGGGAATTGGAATCCTATTATCCACTACTTCCATGGCTGCATTAGCAATTGCTGAGAGTGTTAGGAGGGAAACTG CAATCAAGGAAGGATTCTCAGACAGGCCTGATGCTGGATTGCACATTTCTACATTTTTGTTTTTGCCATTTCTTGCCCTGTCTGGAGTAGCTGAGGCTTT CACTCCTATCGGACAGAACGAATTCTTTTACACCGAATTGCCTAAAAGCATGTCCAGTGTAGCCTCCACTCTTAATGGGATAGGAATGTCTGTTGCAAGC TTGGTATCCAGTTTTATAGTTCGTGCTGTTCGTGATTTAACGAAAGTAGAAGGTCAGGAGAGTTGGGTTTCAAGCAATATCAACAAGGGGCATTATGATT ATTATTATTGGCTTCTTGCAAGTTTGAGCTTGGTTAACTTCTTATATTATCTTGTTTGTAGCAAATCTTATGGTCCTTCCATGGAAGAACAAAGGAACAT TCTTGCAGATGAAAGTTATTAG
AA sequence Show only first row Show all	>Potri.018G041700.1 pacid=42801293 polypeptide=Potri.018G041700.1.p locus=Potri.018G041700 ID=Potri.018G041700.1.v4.1 annot-version=v4.1 MDCSSEQRQMITEPLLSNGKGGIRTIPFILANEAFERLASFGLSTNMIMYLTREYGMDAAQGAQLLFLFSSATNFTPILGAVLADSYVGRYRMIGFGCMA SLLGMVLLWLTTFPEARQPLCVHFSHSCNSRSTLQLVHLYTAFGFMAIGAGGIRSSSLAFGADQLSITHNLQRARIRESFFRWYYVTVTASVFVAMTCVV YIQENMGWMVGFGVPVVLMILSALSFSLASPFYVKSKPKASWITGLAQVVVASFRNRSVELSTQATVEVRYHTTGSILPVPSKRLRFFNKACIVGNPQVD VTPDGNALDPWSLCTVDQVEDLKTLIKVIPIWSSGMLMFVNVSQGSFIVLQVSTMDRHITSKFEIPAATFLSFAVLVIVLWVALYDRIIIPLVSKIKGQP VRLGLKKRMGIGILLSTTSMAALAIAESVRRETAIKEGFSDRPDAGLHISTFLFLPFLALSGVAEAFTPIGQNEFFYTELPKSMSSVASTLNGIGMSVAS LVSSFIVRAVRDLTKVEGQESWVSSNINKGHYDYYYWLLASLSLVNFLYYLVCSKSYGPSMEEQRNILADESY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52190			Major facilitator superfamily ...		Potri.018G041700 [exp]	0	1
AT1G05577			Domain of unknown function (DU...		Potri.009G024900 [exp]	3.46	0.9739
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.006G062500 [exp]	4.47	0.9642
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G142800 [exp]	4.47	0.9687
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.014G131800 [exp]	5.19	0.9717
AT1G16260			Wall-associated kinase family ...		Potri.003G186100 [exp]	5.29	0.9621
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G048400 [exp]	7.74	0.9642
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	9.00	0.9610
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	9.94	0.9574
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.014G028500 [exp]	10.95	0.9612
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029600 [exp]	11.22	0.9542

Compare expression of checked genes

Potri.018G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.