Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67280 489 / 2e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) AT1G11840 404 / 1e-141 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6) AT1G08110 72 / 3e-14 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084800 [exp] 508 / 0 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.006G160600 [exp] 503 / 9e-180 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.004G013200 [exp] 416 / 3e-146 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6) Potri.009G007200 [exp] 74 / 5e-15 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Potri.006G239802 [exp] 98 / 2e-11 AT1G67280 90 / 7e-13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043235 [exp] 505 / 0 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10011115 [exp] 499 / 4e-178 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10038612 [exp] 471 / 8e-167 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10003523 [exp] 417 / 4e-143 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10002943 [exp] 373 / 9e-130 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6) Lus10000007 [exp] 120 / 1e-33 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6) Lus10016138 [exp] 70 / 1e-13 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10021429 [exp] 69 / 1e-13 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [poplar] [flax] Glyoxalase PF00903 [poplar] [flax] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.018G042100.1 pacid=42801228 polypeptide=Potri.018G042100.1.p locus=Potri.018G042100 ID=Potri.018G042100.1.v4.1 annot-version=v4.1 ATGTTAAGAACAGTAACAGCACCGTCATTATCTTTTTCTTCTTCTTCTACTTGTCTCATTGTCTCAACACAGAATAAATCTTATCTTATCCCACATTCCT TAAAACTTTCTTCCCCATTGATTGGCAATATTAACAAGAGTAATAGTAACAGAACAGTCACTTGCAATTACAATCCTTCAAGAAGACTGGCTCTTTTTCA ACTTGGAGCTGTTATCCCACAATCACAGTTCTTAAGTGGAACCTTAGCACCAGCAAGAAGTAGTGAAGTTGCTGACCAAAATGTGCTAGAGTGGGTCAAG AATGACAAAAGAAGAATGCTTCATGTCGTTTATAGTGTTGGGGACTTGGACAAGACTATAAAATTTTATACTGAATGTCTGGGCATGAAGCTGTTAAGGA AACGTGATATACCTGAAGATAGATATAGCAATGCTTTTCTTGGATATGGACCTGAAGACACTAACTTTACTGTTGAACTTACTTATAATTATGGAGTTGA CAAGTATGACATTGGAGATGGGTTTGGACATTTTGGTATTGCAGTAGAAGATGTTTCGAGGACAGTTGATCTTGTCAAGGCAAAGGGGGGCAAGGTTACT AGAGAACCAGTTCCTGTTAAAGGTGGAAGTACAAAGATTGCTTTTGTTGAAGACCCAAACGGTTATAAGTTTGAGCTCTTGGAGAGAGGCCTTACGCCTG AGCCCCTATGCCAAGTGATGCTTCGAGTGGGTGATCTTGACCGCTCCATAAATTTCTATAAGAAGTCTTTTGGCATGGAGCTTCTACGCAGAAGGGATAA CCCTGAGTACAAGTATATGGTAGCCCTGATGGGTTATGGTCCTGAAGATAAAAATGCAGTGCTAGAGCTGACATATAACTATGGGATTACAGAATACAAC AAGGGAAATGGATATACGCAGATTGCCATAGGCACAGATGATGTCTATAAGAGTGCAGAGGCTGTCAAGCAGTGTGAAGGGAAAATTATCCGTGAACCTG GGCCTATACCAGTTATCAACACCAAGATTACTGCTTGCTTGGATCCTGATGGTTGGAAATCGGTCTTTGTTGATAATGTAGACTTTTTGAAGGAACTGGA GTGA
AA sequence Show only first row Show all	>Potri.018G042100.1 pacid=42801228 polypeptide=Potri.018G042100.1.p locus=Potri.018G042100 ID=Potri.018G042100.1.v4.1 annot-version=v4.1 MLRTVTAPSLSFSSSSTCLIVSTQNKSYLIPHSLKLSSPLIGNINKSNSNRTVTCNYNPSRRLALFQLGAVIPQSQFLSGTLAPARSSEVADQNVLEWVK NDKRRMLHVVYSVGDLDKTIKFYTECLGMKLLRKRDIPEDRYSNAFLGYGPEDTNFTVELTYNYGVDKYDIGDGFGHFGIAVEDVSRTVDLVKAKGGKVT REPVPVKGGSTKIAFVEDPNGYKFELLERGLTPEPLCQVMLRVGDLDRSINFYKKSFGMELLRRRDNPEYKYMVALMGYGPEDKNAVLELTYNYGITEYN KGNGYTQIAIGTDDVYKSAEAVKQCEGKIIREPGPIPVINTKITACLDPDGWKSVFVDNVDFLKELE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.018G042100 [exp]	0	1
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Potri.013G161000 [exp]	2.23	0.9673
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	6.24	0.9663	Pt-RPL21.3
AT2G36145			unknown protein		Potri.006G210000 [exp]	9.59	0.9664
AT4G31560		HCF153	high chlorophyll fluorescence ...		Potri.001G022500 [exp]	11.83	0.9581
AT1G32520			unknown protein		Potri.003G089900 [exp]	13.41	0.9585
AT1G74730			Protein of unknown function (D...		Potri.015G065100 [exp]	14.31	0.9631
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Potri.001G075500 [exp]	15.90	0.9570
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	16.49	0.9556
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	16.88	0.9558
AT2G33180			unknown protein		Potri.001G053700 [exp]	17.32	0.9568

Compare expression of checked genes

Potri.018G042100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.