Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10340 268 / 7e-82 Ankyrin repeat family protein (.1.2) AT2G24600 246 / 3e-73 Ankyrin repeat family protein (.1.2.3.4) AT5G54710 219 / 2e-63 Ankyrin repeat family protein (.1) AT1G34050 217 / 7e-63 Ankyrin repeat family protein (.1) AT5G50140 156 / 5e-41 Ankyrin repeat family protein (.1) AT5G54700 155 / 6e-41 Ankyrin repeat family protein (.1) AT5G02620 149 / 1e-38 ATANK1, ANK1 ankyrin-like1 (.1) AT3G12360 149 / 2e-38 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G07710 148 / 3e-38 Ankyrin repeat family protein (.1) AT3G09550 143 / 4e-36 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187600 [exp] 337 / 1e-107 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.006G223800 [exp] 174 / 5e-48 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 162 / 8e-43 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 159 / 8e-43 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 160 / 3e-42 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 160 / 5e-42 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 157 / 8e-42 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 154 / 4e-41 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 155 / 8e-41 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037894 [exp] 590 / 0 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10038609 [exp] 354 / 1e-118 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10024844 [exp] 310 / 4e-97 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10038608 [exp] 245 / 6e-76 AT1G10340 168 / 2e-47 Ankyrin repeat family protein (.1.2) Lus10018757 [exp] 246 / 4e-73 AT1G34050 298 / 3e-93 Ankyrin repeat family protein (.1) Lus10015037 [exp] 160 / 4e-42 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 153 / 1e-39 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10008329 [exp] 153 / 2e-39 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10041537 [exp] 148 / 8e-39 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10023460 [exp] 148 / 5e-38 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.018G042200.1 pacid=42801287 polypeptide=Potri.018G042200.1.p locus=Potri.018G042200 ID=Potri.018G042200.1.v4.1 annot-version=v4.1 ATGCCCCAATCTCCACCCATGGACCGACGGCTCCGGGAGGCCATCCTGAAGGGAGAGGTCCCTGCCTTCCTTACTCTGATTCAAGAAGATGAACATATTA TTGATCAAACAATTCCAGGGTCGTCAAGCAACATTTTACACATAGTATCACGTTTTGGACACGTAGAGCTGGCAAAGGAGATTGTGAGGCTGAGGCCGGA ATTGATGTTCGAGGAGAATGAGAAGATGGAGACCCCATTGCATGAAGCATGCAGGGAAGGGAAGATGGAAATGGTGAGGTTATTGGTGGAGACTGATCCT TGGCTGGTTTACAAGGTGAATCAAGACAACGGGAGTGCTCTAACTGTGGCATGTGAAAGAGGGAAGCTTGATGTGGTAGACTATCTCTTGAGTTTCCCAG GGCTGCTAATGTTGGAACTTGATGGTTTTACCACTTCTCTTCATGCTGCAGCTTCAGGCGGCCATACAGACATTGTAAAGGAAATCCTGAAGGCACGCCC GGACTTCGCATGGAAAAATGATCTTCAAGGATGCTCACCTTTACACCTATGCTGCAAGAAAGGCCACCTTGAAGTAACCAGGGAGCTACTAAGGTTTGAC GCCGAGCTCTCTTCCTTGCAAGACAATGATGGCCGAACCCCACTTCATTGGGCAGCAATCAAAGGCAGAGTGAACGTCATTGACGAGATACTCTCAACAA GCCTTGAATCTGCTGAAGTGATTACTAAACATGGAGAGACAGTTCTCCATCTGGGGGTGAAAAACAATCAGTATGAAGCTGTTAAGTACCTTACAGAGAT GCTCAACATCACAAAGCTTGTTGACAAGCCAGATAATGATGGGAATACAGCTCTGCATCTAGCTACTGCTGGGAAACTTAGTACTATGGTCATCTACTTA CTGAAGCTTGGTGTTGATGTCAATGCTATAAACCAAAGGGGACAGACTGCTTTTGATGTAGTTGAGTCTGACGTGAGCAATTCTGGTGTTCTTTTGATTT TACCTGCATTACAAGATGCTGGAGGCAAGAGAAGTGATCAATTGCCTCCAAGTTCAATTGAAATTCAACAAATACAACAAGAAAAGAGCTTGCTATCTTC ATCAACAAAGCGAATGACTGAATCTACTACTAAGCATCACCGTCGTTCTCAGCATCGCCGCCGAGAGAAGCAGCTAGAGCTTCAAACGGAGGGACTACGA AATGCTCGTAACACGATTATTGTTGTAGCAGTTCTAATAGCAACTGTTACATTTGCTGCTGGGATAAACCCTCCTGGGGGTTTTAGACAAGACACAGGGG AAAGCACAACGGGCAGGCATTCTTCTTTCAAGATCTTTGTGGTGTGCAACATTGTGGCATTATTTTTGTCCCTTGGCACTGTTGTTTTCCTTGTCAGCAT TGTCCCTTTTCAGCGAAAATCATTGATGATATTGTTGGCGGTGACACATAAGGTTATGTGGCTATCCATATCATTCATGGCGGCCGGTTACATTGCTGCC ATGTGGACTATTTTGCCACACGGGCGAGGACGGGGTACGCAATGGGTATTTGTAGCAATAGTGGCTATAGGGGGAGGGTGCACAATGGCAATTTTTGTGG GTTTGGGGGTTTTGCTGGCAAAGCATTGGCTTAGGAAATGGGAATGGAGGCGAAGCAAGGAAAAAAGAAAGAACGAAAGCCCAAGTAGCAGCGTTAGTCG CGTTGAAGAACTAGGTATGATGAGAAAAGGCAGCCATGACTCTAGTAATTCAGATGTTGATAGCTCAGATAAAGGGGGTTACCACTTGTACTAG
AA sequence Show only first row Show all	>Potri.018G042200.1 pacid=42801287 polypeptide=Potri.018G042200.1.p locus=Potri.018G042200 ID=Potri.018G042200.1.v4.1 annot-version=v4.1 MPQSPPMDRRLREAILKGEVPAFLTLIQEDEHIIDQTIPGSSSNILHIVSRFGHVELAKEIVRLRPELMFEENEKMETPLHEACREGKMEMVRLLVETDP WLVYKVNQDNGSALTVACERGKLDVVDYLLSFPGLLMLELDGFTTSLHAAASGGHTDIVKEILKARPDFAWKNDLQGCSPLHLCCKKGHLEVTRELLRFD AELSSLQDNDGRTPLHWAAIKGRVNVIDEILSTSLESAEVITKHGETVLHLGVKNNQYEAVKYLTEMLNITKLVDKPDNDGNTALHLATAGKLSTMVIYL LKLGVDVNAINQRGQTAFDVVESDVSNSGVLLILPALQDAGGKRSDQLPPSSIEIQQIQQEKSLLSSSTKRMTESTTKHHRRSQHRRREKQLELQTEGLR NARNTIIVVAVLIATVTFAAGINPPGGFRQDTGESTTGRHSSFKIFVVCNIVALFLSLGTVVFLVSIVPFQRKSLMILLAVTHKVMWLSISFMAAGYIAA MWTILPHGRGRGTQWVFVAIVAIGGGCTMAIFVGLGVLLAKHWLRKWEWRRSKEKRKNESPSSSVSRVEELGMMRKGSHDSSNSDVDSSDKGGYHLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10340			Ankyrin repeat family protein ...		Potri.018G042200 [exp]	0	1
					Potri.017G111050 [exp]	1.73	0.9096
					Potri.012G124788 [exp]	2.23	0.8979
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013800 [exp]	5.47	0.8823
AT1G34300			lectin protein kinase family p...		Potri.013G115700 [exp]	5.74	0.9041
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	8.24	0.9060
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	11.83	0.9002
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	15.42	0.8824
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	15.55	0.8865
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	15.65	0.8933
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.019G055200 [exp]	17.83	0.8502

Compare expression of checked genes

Potri.018G042200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.