Plant FIBer expression Database

Potri.018G042350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29090 81 / 3e-16 Ribonuclease H-like superfamily protein (.1)
AT3G24255 57 / 1e-08 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
AT2G02650 57 / 1e-08 Ribonuclease H-like superfamily protein (.1)
AT3G25270 50 / 1e-06 Ribonuclease H-like superfamily protein (.1)
AT3G09510 49 / 6e-06 Ribonuclease H-like superfamily protein (.1)
ATMG00320 42 / 0.0002 ATMG00320.1, ORF127 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G000101
[exp]
76 / 9e-15 AT3G24255 193 / 1e-53 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13966 zf-RVT zinc-binding in reverse transcriptase
Representative CDS sequence
>Potri.018G042350.1 pacid=42801182 polypeptide=Potri.018G042350.1.p locus=Potri.018G042350 ID=Potri.018G042350.1.v4.1 annot-version=v4.1
ATGGCTGGGAGAATTTGTCTTATTAAATCTGTCTTAAACTCTCTACCTCTATACTACATGTCTGTTTTTACTATGCCAAAGGGAATTACAAAGGCTATAT
CCTCCATCAATCGTCGTTTTCTCTGGAAGGGCACCTTAAATTCACATGGTATTTGTAAGGTTGCTTGGAACAAGGTAATTAAGAGTAAGTCGCTTGGAGG
TCTTGGGTTGGGTTCTATTCACAACAAAAATTTAGCTCTGATGTTTAAATGGCTCTGGAACCTTGATAAAAGAGTGGTAGGAGGTTGGCAAGATCTTATC
CTACGAAAGCACCGGCCATATTTCGTAAATGGCCTTCCTGTGTTTGCAGGCTCTTTATCTCCAACTTGGCGTGGCTTGGTATCTGCAATTTCCTTAAATC
ACAGCATATCCGCTCCCCTCCAATCCAATGTCGGGTTCAAGGTGGGCGATGGGAGAAACATCAGGTTCTGGTCTGATTCCTGGCTAGGCCATGCAGCCCC
TCTTCAGTTCATGTTTCCTAGGCTTTACAACCTCTCCCTGCAGCAATCTTTAAGCATTGCAGAAGTCCATAACCAAAGTGATAACTCAATCAATCTTTCT
TGGAGAAGACCACTTCGATCCCGCGAGCTCTGTATGCGGGAAAGCTTGATAGCAGAAGTGGAACGTGGTCTAGTCTTCTCTGATGGTGAAGACAGAAAGA
TTTGGAAATCCCACAGCTCCAACGTCTACACAGTCTCCTCAGGATGCCATCTTCTAGATGGTTTAATTGTTTCATCAAACCTTCACTCCCCTGCTCTGCT
TTGGAAAGGGTTTGCTCCTCCGAAAATAGATGTGTTCATATGGCTTCTCCTAAACGGCAGTGTTTGCACAAAATATTTCTTAGCTAAGAGAAGAATCATC
AATTATGAGGATGCTCTTTGCCCTTTCTGCTGCAAGGAGATTGAGACTATACATCATCTCTTCCATCTCCGTCCTACATCTTGGTCTCTCTGGGGTAGAC
TCGTCAGATGGTTTGGGTGCGTAGGCTGTCTGCCAAAAGACCCAAATCATAACCTTCAGGAATGGTCCGGCCTGTTAAAAGGAAATTTTCAACGTCAAGC
AATTACCCTTCTCTGTAAAGGATTATACTGGTCAATTTGGATAGCGCGCAACAATATGATCTTCGACTCCAAAACTCCAGACTGGGATGTGATTTTTGAC
CTCACCTTTCATCGGTTGGCCTTTTGGTTGAAGTCCTCTGTTAAAAATTTCAGTTACACAGGTTCCGATCTTTATAGAAATCCTGAATGTATCATGAACT
GGACTAACTAG
AA sequence
>Potri.018G042350.1 pacid=42801182 polypeptide=Potri.018G042350.1.p locus=Potri.018G042350 ID=Potri.018G042350.1.v4.1 annot-version=v4.1
MAGRICLIKSVLNSLPLYYMSVFTMPKGITKAISSINRRFLWKGTLNSHGICKVAWNKVIKSKSLGGLGLGSIHNKNLALMFKWLWNLDKRVVGGWQDLI
LRKHRPYFVNGLPVFAGSLSPTWRGLVSAISLNHSISAPLQSNVGFKVGDGRNIRFWSDSWLGHAAPLQFMFPRLYNLSLQQSLSIAEVHNQSDNSINLS
WRRPLRSRELCMRESLIAEVERGLVFSDGEDRKIWKSHSSNVYTVSSGCHLLDGLIVSSNLHSPALLWKGFAPPKIDVFIWLLLNGSVCTKYFLAKRRII
NYEDALCPFCCKEIETIHHLFHLRPTSWSLWGRLVRWFGCVGCLPKDPNHNLQEWSGLLKGNFQRQAITLLCKGLYWSIWIARNNMIFDSKTPDWDVIFD
LTFHRLAFWLKSSVKNFSYTGSDLYRNPECIMNWTN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29090 Ribonuclease H-like superfamil... Potri.018G042350
[exp]
0 1
AT1G18390 Protein kinase superfamily pro... Potri.015G044750
[exp]
12.76 0.8083
Potri.003G153332
[exp]
14.14 0.7633
Potri.003G153266
[exp]
15.09 0.7720
AT4G16380 Heavy metal transport/detoxifi... Potri.006G019700
[exp]
25.37 0.7092
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.005G057000
[exp]
26.15 0.7415
AT4G38040 Exostosin family protein (.1) Potri.010G197900
[exp]
26.26 0.6958
AT5G38260 Protein kinase superfamily pro... Potri.015G045000
[exp]
27.60 0.7861
AT2G46060 transmembrane protein-related ... Potri.014G087300
[exp]
32.31 0.7256
AT4G16380 Heavy metal transport/detoxifi... Potri.006G019600
[exp]
36.74 0.7094
AT1G34420 leucine-rich repeat transmembr... Potri.013G114200
[exp]
36.94 0.7746

Potri.018G042350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.