Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20030 245 / 2e-77 RING/U-box superfamily protein (.1) AT4G28890 231 / 9e-72 RING/U-box superfamily protein (.1) AT5G05810 135 / 3e-36 ATL43 RING/U-box superfamily protein (.1) AT1G35330 111 / 1e-27 RING/U-box superfamily protein (.1) AT1G72200 109 / 2e-26 RING/U-box superfamily protein (.1) AT1G22500 102 / 4e-24 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT5G17600 102 / 4e-24 RING/U-box superfamily protein (.1) AT4G40070 102 / 4e-24 RING/U-box superfamily protein (.1) AT3G05200 101 / 2e-23 ATL6 RING/U-box superfamily protein (.1) AT2G34990 100 / 2e-23 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239500 [exp] 555 / 0 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 342 / 6e-115 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 160 / 9e-45 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 108 / 6e-26 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 105 / 5e-25 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 104 / 1e-24 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 103 / 1e-24 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 103 / 3e-24 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 100 / 2e-23 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009511 [exp] 300 / 7e-99 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10011702 [exp] 299 / 2e-98 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10012975 [exp] 233 / 2e-72 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 213 / 6e-65 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10023617 [exp] 127 / 6e-33 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10036466 [exp] 110 / 1e-26 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041134 [exp] 108 / 4e-26 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10015167 [exp] 107 / 4e-26 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10004460 [exp] 106 / 3e-25 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 106 / 4e-25 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.018G042501.1 pacid=42801634 polypeptide=Potri.018G042501.1.p locus=Potri.018G042501 ID=Potri.018G042501.1.v4.1 annot-version=v4.1 ATGGCTATCTCTATGAATCAATTACATCTCGTCATAATTCTTAGCTTGTTCTTTCATGTCAAAGCCCAAATCACTTCTGATTCGGATACAGGTATCCTCA AACCACTCCATCCAAGCCTTGCAGTAGTCCTCGGGATCATCTCGATCATGCTGTCGATGACGTTTCTTATACTTGCCTACGCAAAATACTGCAGGATAAA CCAAAATAATTTCTTAGGCAGTAATCCCGGCCATCACCAAAATGTTCATGGACTTATTCGATCAAGGTCTAGATTTTCAGGGATCGATGAAGAATTGATT AATTCCCTGCCTTTTTTCAGGTTTTCTTCACTCAAAGGCTCAAAAGAAGGCCTGGAATGTGCAGTTTGCATATCAAAATTTGAGGATTCTGAGGTCCTCA GACTGTTGCCTAAGTGCATGCATGCATTTCACAAGAATTGCATCGACCAATGGCTAACAAGTCACTCTAGCTGTCCTCTTTGCAGATACAAGTTAGATCC TATGGATCTCAAGAGCTTCTCTTGCTCAAAAAGTTGGAGATACTTGCAAAATCCTTCAGATCTAACAGAGGATCCTAATCTTGAGATCTTTGTTGAAAGA GAGCAAGATCATCAAGGTCCATTACAGAAGGAAGAGTTGCTGATTATAGCAGGTAGAAATGCTGACGATAACAGGAAACTCTTGCATAAATTCAAGCACA AGATCATTATTTCGGATGTTCTTATCAAGAATCGATGGAGCGATGTTAATTCTTCAGATTTTTTGTCCTTGAACACTGAGATGCTTAGAGTCATGTCAAG CAACAGATTTTCTCCTTTGAAATCAAGTAGTGCAAGATTCCACGATGGCTTGTCCAGGAATGAAAATTTTGAAAATATTAAGGAGGATATAGAAAGGAAG AGATTGTTAGAATCCAAGTTTACTACAGTTGACAGAAGTAATTCTGTTTCAAGTTCAAGCTTAAATTCATCAAAAATGATTAATCCTGCATCGAAGAGAT CAATGTCTGAGATCACAATTTTTTCAAGGTTCAGACAGCTAAGTGTGAGGAACAAAACAAGAGAATCTACATCCCCTGGGAATGGTGCAACAGATGAGAG AATCAGAAAGCTTTGGCTGCCAATAGCACGGCGAACAATACAATGGTTTGCCGGTCAAGAAAGAAACATACAACAATTAGAGTACCAAAGACAATCATCA AATGTGTGA
AA sequence Show only first row Show all	>Potri.018G042501.1 pacid=42801634 polypeptide=Potri.018G042501.1.p locus=Potri.018G042501 ID=Potri.018G042501.1.v4.1 annot-version=v4.1 MAISMNQLHLVIILSLFFHVKAQITSDSDTGILKPLHPSLAVVLGIISIMLSMTFLILAYAKYCRINQNNFLGSNPGHHQNVHGLIRSRSRFSGIDEELI NSLPFFRFSSLKGSKEGLECAVCISKFEDSEVLRLLPKCMHAFHKNCIDQWLTSHSSCPLCRYKLDPMDLKSFSCSKSWRYLQNPSDLTEDPNLEIFVER EQDHQGPLQKEELLIIAGRNADDNRKLLHKFKHKIIISDVLIKNRWSDVNSSDFLSLNTEMLRVMSSNRFSPLKSSSARFHDGLSRNENFENIKEDIERK RLLESKFTTVDRSNSVSSSSLNSSKMINPASKRSMSEITIFSRFRQLSVRNKTRESTSPGNGATDERIRKLWLPIARRTIQWFAGQERNIQQLEYQRQSS NV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	0	1
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	2.44	0.9832
AT2G37240			Thioredoxin superfamily protei...		Potri.008G113000 [exp]	2.64	0.9712
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G175300 [exp]	2.82	0.9760
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071200 [exp]	4.89	0.9710
AT1G01490			Heavy metal transport/detoxifi...		Potri.003G132200 [exp]	5.83	0.9565
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.005G080900 [exp]	6.00	0.9625
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258700 [exp]	7.48	0.9434	PTR2.1
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.008G073400 [exp]	7.74	0.9527
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.008G071600 [exp]	8.83	0.9617
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	8.94	0.9570

Compare expression of checked genes

Potri.018G042501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.