Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46210 404 / 1e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT2G07110 97 / 4e-25 unknown protein AT3G61620 90 / 2e-21 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 69 / 1e-13 3'-5'-exoribonuclease family protein (.1) AT3G03710 56 / 9e-09 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT3G44130 49 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT5G14580 49 / 2e-06 polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239100 [exp] 333 / 3e-117 AT3G46210 295 / 4e-102 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.014G094300 [exp] 79 / 2e-17 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.004G212500 [exp] 69 / 8e-14 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 69 / 8e-14 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.019G040100 [exp] 61 / 1e-10 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 58 / 2e-09 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.001G347900 [exp] 45 / 2e-05 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.006G051200 [exp] 40 / 0.0008 AT1G60080 434 / 8e-155 3'-5'-exoribonuclease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009221 [exp] 427 / 1e-153 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10037991 [exp] 418 / 8e-150 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10003036 [exp] 71 / 4e-14 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10005148 [exp] 69 / 1e-13 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10037395 [exp] 61 / 7e-11 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10041318 [exp] 54 / 2e-08 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10013636 [exp] 52 / 2e-07 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 51 / 3e-07 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10000255 [exp] 49 / 6e-07 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2) Lus10008763 [exp] 45 / 4e-05 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01138 [poplar] [flax] RNase_PH 3' exoribonuclease family, domain 1
Representative CDS sequence Show only first row Show all	>Potri.018G043600.1 pacid=42801550 polypeptide=Potri.018G043600.1.p locus=Potri.018G043600 ID=Potri.018G043600.1.v4.1 annot-version=v4.1 ATGGAGAGTGACAGAGACGATGGTCGTTCTCCAAGCCAATTAAGACCTCTCTCTTGCGCTCGCAATGTACTTCACCGTGCTCATGGCTCTGCCAGTTGGT CTCAAGGGGATACAAAGGTCTTAGCTGCTGTTTATGGACCTAAAGCTGGCACAAAGAAGAATGAGAACCCTGAGAAGGCTTGTATTGAAGTTATTTGGAA GCCGAAGACAGGACAAATTGGAAAACTGGAAAAGGAATTTGAGATGATATTGAAGAGGACTTTGCAAAGTATCTGCATTTTGACTCTCAATCCAAACACC ACAACATCAATTATCGTTCAGGTTGTTAATGATGATGGTGCTCTTCTAGTCTGTGCTATAAATGCAGCATGTGCTGCCCTCGTAGATGCTGGAATTCCTA TGAAACATCTTGCTGTTGCAATATGTTGTTGTTTGGCAGAAGGTGGATATGTTATATTGGATCCTACCAAGCTGGAAGAGCAGAAAATGAGGGGATTCAC ATATTTAGTCTTCCCAAACTCTGTTGTCTCTGTTCTACCAGAAGGATCATCCCATGTAGAAGGTGAACCCATGGAACATGGAATCATCACCTCTGTTACC CATGGTGTAATGTCAGTGGAAGAATATCTCAAATGTCTAGAACGAGGGCGTGCAGCCAGTACAAAATTGTCTGATTTTCTTAGGAGGAGCTTGCAATCAC AACTTCCAAGCGACTCATCTAAAGCTGCGTAA
AA sequence Show only first row Show all	>Potri.018G043600.1 pacid=42801550 polypeptide=Potri.018G043600.1.p locus=Potri.018G043600 ID=Potri.018G043600.1.v4.1 annot-version=v4.1 MESDRDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEVIWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNT TTSIIVQVVNDDGALLVCAINAACAALVDAGIPMKHLAVAICCCLAEGGYVILDPTKLEEQKMRGFTYLVFPNSVVSVLPEGSSHVEGEPMEHGIITSVT HGVMSVEEYLKCLERGRAASTKLSDFLRRSLQSQLPSDSSKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.018G043600 [exp]	0	1
AT5G62290			nucleotide-sensitive chloride ...		Potri.015G129900 [exp]	2.82	0.8150
AT4G32605			Mitochondrial glycoprotein fam...		Potri.010G244500 [exp]	2.82	0.8048
AT4G13330			S-adenosyl-L-methionine-depend...		Potri.008G171900 [exp]	6.63	0.7708
AT5G64680			unknown protein		Potri.001G068500 [exp]	7.14	0.8019
AT2G47790			Transducin/WD40 repeat-like su...		Potri.014G130600 [exp]	8.77	0.7938
AT3G01800			Ribosome recycling factor (.1)		Potri.001G333700 [exp]	10.39	0.8011
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.017G017400 [exp]	16.88	0.7654	PHB1.2
AT4G28200			unknown protein		Potri.007G040000 [exp]	18.43	0.7967
AT3G59630			diphthamide synthesis DPH2 fam...		Potri.006G123700 [exp]	18.97	0.7533
AT5G22100			RNA cyclase family protein (.1...		Potri.009G016000 [exp]	26.83	0.7689

Compare expression of checked genes

Potri.018G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.