Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11600 110 / 6e-30 unknown protein AT1G19990 77 / 3e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238800 [exp] 182 / 2e-58 AT5G11600 137 / 2e-40 unknown protein Potri.005G239600 [exp] 88 / 8e-21 AT1G19990 92 / 6e-22 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001603 [exp] 153 / 6e-47 AT5G11600 158 / 2e-48 unknown protein Lus10002800 [exp] 138 / 5e-41 AT5G11600 155 / 3e-47 unknown protein Lus10033141 [exp] 92 / 3e-22 AT1G19990 132 / 2e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G043800.1 pacid=42801234 polypeptide=Potri.018G043800.1.p locus=Potri.018G043800 ID=Potri.018G043800.1.v4.1 annot-version=v4.1 ATGGCAACAGAAAGCAAGCAAAGCGTGGTGAAAGTGAAGCCAAGCAGTAGTAATTTTGATGGTTCCAAAGGAAAGATTGAATCTTCGATGAAAGCTAAGA AAATTGAGAGCTCAAACAAACAACAACAACAATCTGTTGTTGATTCAAAGGATAAATCTATCTCAGTTGTAACTAAAACTGAGGTAAAATCAAAATCAGC ACCGAGTTCGTCAAAAACTACGACGACAACCACTACCACTAGAGTGAGACAGAAGAAAGTATACTCCTTGCCAGGCCAGAGATATGATCCTCCTGAAGAG AGAGAACCACTTAGGATATTCTACGAGTCTTTGTCTAAACAGATTCCAACTAGTGAAATGGCAGAATTTTGGATGATGGAACATGGCTTACTATCCCCAG AGAGAGCCAAAAAGGCACATGAGAAGAAACAGAGAAAGCAAAAAATGCAACGATTTGGAACTCCCATTAAATCTACCAAACCATCCACTAGTAAACCTGA GAGTTCTCAAAAGCAGCAGCAGTCATCAAAGAATGGAGACCTTAAAGCCAAGAGGAAAATCAGCAATGACAGTGACGATGACGACTTTATTTTAAGTTCG AAAAGAAGGAAAGGGTAA
AA sequence Show only first row Show all	>Potri.018G043800.1 pacid=42801234 polypeptide=Potri.018G043800.1.p locus=Potri.018G043800 ID=Potri.018G043800.1.v4.1 annot-version=v4.1 MATESKQSVVKVKPSSSNFDGSKGKIESSMKAKKIESSNKQQQQSVVDSKDKSISVVTKTEVKSKSAPSSSKTTTTTTTTRVRQKKVYSLPGQRYDPPEE REPLRIFYESLSKQIPTSEMAEFWMMEHGLLSPERAKKAHEKKQRKQKMQRFGTPIKSTKPSTSKPESSQKQQQSSKNGDLKAKRKISNDSDDDDFILSS KRRKG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11600			unknown protein		Potri.018G043800 [exp]	0	1
AT2G04660		APC2	anaphase-promoting complex/cyc...		Potri.008G089100 [exp]	12.84	0.8485	APC2.2
AT5G40600		EMB1875	unknown protein		Potri.003G101100 [exp]	26.15	0.8274
AT5G10350			RNA-binding (RRM/RBD/RNP motif...		Potri.007G095800 [exp]	27.45	0.8223
					Potri.001G123250 [exp]	34.46	0.8033
AT5G15770		ATGNA1	glucose-6-phosphate acetyltran...		Potri.018G086400 [exp]	35.09	0.8340
					Potri.001G181601 [exp]	40.39	0.8230
AT5G18540			unknown protein		Potri.008G216700 [exp]	52.24	0.8260
AT4G16800			ATP-dependent caseinolytic (Cl...		Potri.003G080800 [exp]	62.16	0.7930
AT5G50460			secE/sec61-gamma protein trans...		Potri.015G097300 [exp]	73.52	0.8046	SEC61.2
AT3G05890		RCI2B	RARE-COLD-INDUCIBLE 2B, Low te...		Potri.005G002250 [exp]	86.45	0.8032

Compare expression of checked genes

Potri.018G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.