Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25800 1467 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 1119 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G33420 685 / 0 Protein of unknown function (DUF810) (.1) AT1G04470 657 / 0 Protein of unknown function (DUF810) (.1) AT5G06970 404 / 8e-124 Protein of unknown function (DUF810) (.1) AT4G11670 245 / 3e-67 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238200 [exp] 1715 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 1190 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.010G068000 [exp] 667 / 0 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 665 / 0 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 396 / 7e-121 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 302 / 9e-87 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034947 [exp] 1168 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 904 / 0 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 796 / 0 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 643 / 0 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 617 / 0 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008430 [exp] 557 / 0 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 553 / 0 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012969 [exp] 552 / 0 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 448 / 9e-148 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10026160 [exp] 421 / 6e-130 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [poplar] [flax] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Potri.018G044200.1 pacid=42801812 polypeptide=Potri.018G044200.1.p locus=Potri.018G044200 ID=Potri.018G044200.1.v4.1 annot-version=v4.1 ATGGCTTCTCTCTTTAGAGAGCTCTCTTTAGGCCACTCTAAGAGAGATTCCATCCCACCACCGCTTAAGCCACCGCCATTATCCATAATGCTCTCTAAAC CCACTATCACCACTACTGATCTCGGCTCCCCACTAGGCCAACTCGGCACCCAACTCTCCGATTCCGACCTCCGGTCCACCGCTTACGAGATCTTCGTCGC CGTTTGTCGTACTTCCTCCGGCAAGCCCTTAACTTACACTCCCAACTCCAATTCTGACTCACCTACCAACCACTCGACTCACTCCCCTAACTCTCCTGCT TTGCAACGCTCACTCACCTCTGCTGCTGCTAGCAAAATGAAGAAAGCTTTGGGGCTGAAGTCTCCGGGTTCGGGTTCTAAGAAGAGTCCGGGGTCGGGTC AGGGGAAGATAAGGAGAGGTTTGACCGTTGGTGAGTTGATGCGGGCTCAAATGCGGGTCAGTGAGACTGTGGATTCTAGGATTAGAAGGGCTTTGTTGAG GATTGCTGCCGGTCAGGTTGGAAGGCGAATTGAGTCGATTGTTCTTCCACTAGAGCTACTGCAACAGCTCAAGCTTTTGGATTTTACTGATCAACAAGAA TATGAAATGTGGCAGAAGAGAACCATGAAAGTTCTTGAGGCTGGACTTCTTTTGCATCCCCATGTGCCACTTGATAAGTCAAACCCTACTTCACAGCGGC TGCAGCAAATTCTCCATGGAGCTATGGATAGGCCTATAGAGACTGGAAAGAATAATGAGTCCATGCAAGTGCTTCGCAGTGCTGTTATGTCACTAGCAAG TAGATCTGATGGGTCTCTCTCAGAGATATGCCACTGGGCTGATGGGATTCCATTGAATCTTCGACTCTATGAAATGCTTTTACAAGCCTGCTTTGATGTT AATGACGAAACATCTATAATTGATGAAATTGATGAACTGATGGAACACATAAAGAAGACTTGGACAATCCTTGGAATGAATCAAATGCTCCACAATCTTT GCTTCACATGGGTTTTATTTCACCGTTTTGTTGCAACTGGCCAAGTAGAAACGGATCTGCTTGATGCAGCTGATGGTCAGCTAGCAGAAGTTGCAAAAGA TGCGAAGACAACAAAGGATCCGCAATGCTCCAAGATTTTGAGTTCTACATTGAGTTCAATATTGGGATGGGCAGAGAAAAGACTCCTCGCTTATCATGAC ACTTTTGACAGGGGGAATGCCCAGACCATGCAGGGAATTGTTTCTCTGGGGGTGTTGGCAGCCAAGATTTTGGTTGAGGATATATCTAATGAGTATCGCA GAAAGAGAAAAAGTGAAGTAGATGTGGCTCGTACCAGGATTGAAACTTACATCAGATCATCACTACGCACTGCTTTTGCTCAAAGAATGGAGAAAGCAGA CTCAAGCCGGAGAGCATCCAAAAACCAGCCAAACCCTCTTCCTATTCTTGCCATCCTTGCAAAGGATGTTGGTGAGTTGGCAGTTAACGAGAAGCAAGTA TTTAGTCCAATACTGAAAAGATGGCATCCTTTCTCGGCTGGTGTTGCTGTGGCCACGCTTCATGCTTGCTATGGAAATGAGATAAAACAATTCATATCTA GTATAGTGGAATTAACACCAGATGCCGTGCAAGTGCTTAGAGCCGCAGATAAACTGGAGAAAGATCTGGTGCAGATTGCTGTAGAAGATTCAGTGGACAG TGATGATGGTGGGAAGGCAATAATCCGTGAAATGCCTCCTTATGAAGCTGAAGTTGCCATTGCCAATCTGGTTAAAGGATGGATCAAAGCAAGACTAGAC AGACTTAAGGAATGGGTTGACAGGAATTTGCAACAAGAGGTCTGGAACCCGCAGGCAAATCAAGAAGGATACGCTCCATCTGCCGTTGAAGTTTTGCGGA TTATTGATGAAACTTTGGATGCATATTTCCAGCTGCCAATACCAATGCATCCAGCACTGCTACCTGACTTGATGGCTGGTCTTGACAGATGCCTTCAGTA TTATGCAACCAAGGCAAAATCTGGCTGTGGATCACGAAATAAATATGTTCCAAATATGCCAGCATTGACCAGATGTACTGCAGGATCAAAGTTTGTGTGG AAGAAGAAAGATAAGTTACCAAACACTCAGAAGAGAAATTCACAGGTTGTGACAATGAACGGGGATAATTCCTTTGGGGTGCCCCAGCTCTGTGTTCGTA TAAATACTTTGCACAGAATCCGATCAGAGTTGGATGTATTAGAGAAGAGAATAATAACCCATTTGAGGAACTCAGAATCTGCTCATGCAGAAGACTTTAC AAATGGTTTGGCAAAAAAGTTTGAACTAACACCAGCTGCTTGTATAGAAGGAGTTCAACAACTAAGTGAGGCTGTTGCTTACAAAATCATTTTCCATGAC TTGAGTCATGTTTTGTGGGATGGTTTGTATGTTGGAGAGCTATCATCTTCTAGGATTGAACCCTTTACCCAGGAGCTTGAGCGGAATTTGCTGATCATTT CAAACACAATACATGAAAGAGTTCGGACACGAATTGTTACCGACATAATGAGAGCTTCCTTTGATGGATTCCTGTTTGTTTTGCTTGCGGGAGGCCCTTC TCGTGCTTTCACGCTCCAGGACTCTCAGATAATAGAGGATGATTTCAATTCCCTTAAAGATCTATTTTGGGCCAATGGGGATGGCCTGCCCGCCGATTTG ATAGACAAGTTTTCAACCACAGTCAGAAGTATCCTTCCCCTTCTCAAAACAGATACAGAGAGTCTAGTTGAGCGTTACAGACGTGTAACCTTGGAGACAT ATGGCTCTTCTGCGAGGTCTAAACTTCCATTACCTCCAACTTCAGGGCAGTGGAATCCTACTGACCCAAACTCGCTTCTCCGTGTGTTGTGTTACCGGAA TGATGAAGCAGCATCAAAGTTTCTCAAGAAGAACTACAATTTACCCAAGAAACTGTAA
AA sequence Show only first row Show all	>Potri.018G044200.1 pacid=42801812 polypeptide=Potri.018G044200.1.p locus=Potri.018G044200 ID=Potri.018G044200.1.v4.1 annot-version=v4.1 MASLFRELSLGHSKRDSIPPPLKPPPLSIMLSKPTITTTDLGSPLGQLGTQLSDSDLRSTAYEIFVAVCRTSSGKPLTYTPNSNSDSPTNHSTHSPNSPA LQRSLTSAAASKMKKALGLKSPGSGSKKSPGSGQGKIRRGLTVGELMRAQMRVSETVDSRIRRALLRIAAGQVGRRIESIVLPLELLQQLKLLDFTDQQE YEMWQKRTMKVLEAGLLLHPHVPLDKSNPTSQRLQQILHGAMDRPIETGKNNESMQVLRSAVMSLASRSDGSLSEICHWADGIPLNLRLYEMLLQACFDV NDETSIIDEIDELMEHIKKTWTILGMNQMLHNLCFTWVLFHRFVATGQVETDLLDAADGQLAEVAKDAKTTKDPQCSKILSSTLSSILGWAEKRLLAYHD TFDRGNAQTMQGIVSLGVLAAKILVEDISNEYRRKRKSEVDVARTRIETYIRSSLRTAFAQRMEKADSSRRASKNQPNPLPILAILAKDVGELAVNEKQV FSPILKRWHPFSAGVAVATLHACYGNEIKQFISSIVELTPDAVQVLRAADKLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEVAIANLVKGWIKARLD RLKEWVDRNLQQEVWNPQANQEGYAPSAVEVLRIIDETLDAYFQLPIPMHPALLPDLMAGLDRCLQYYATKAKSGCGSRNKYVPNMPALTRCTAGSKFVW KKKDKLPNTQKRNSQVVTMNGDNSFGVPQLCVRINTLHRIRSELDVLEKRIITHLRNSESAHAEDFTNGLAKKFELTPAACIEGVQQLSEAVAYKIIFHD LSHVLWDGLYVGELSSSRIEPFTQELERNLLIISNTIHERVRTRIVTDIMRASFDGFLFVLLAGGPSRAFTLQDSQIIEDDFNSLKDLFWANGDGLPADL IDKFSTTVRSILPLLKTDTESLVERYRRVTLETYGSSARSKLPLPPTSGQWNPTDPNSLLRVLCYRNDEAASKFLKKNYNLPKKL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25800			Protein of unknown function (D...		Potri.018G044200 [exp]	0	1
AT5G02440			unknown protein		Potri.009G030100 [exp]	6.16	0.8767
AT4G00440			Protein of unknown function (D...		Potri.014G084600 [exp]	8.94	0.8401
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070800 [exp]	10.09	0.8066
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	18.38	0.8616	SYP131.2
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	20.61	0.8461
AT1G34350			unknown protein		Potri.019G085500 [exp]	22.71	0.8474
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	23.93	0.8499
AT4G36440			unknown protein		Potri.007G019400 [exp]	27.54	0.8368
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	32.58	0.7952
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G097800 [exp]	38.02	0.8448	ALPHA.3

Compare expression of checked genes

Potri.018G044200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.