Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11580 578 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 110 / 6e-26 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 105 / 2e-24 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 103 / 1e-23 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G19420 97 / 1e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 96 / 2e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 90 / 2e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G02300 87 / 8e-18 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G69710 87 / 1e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 86 / 2e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100200 [exp] 125 / 9e-31 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 113 / 5e-27 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 108 / 3e-25 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G099900 [exp] 88 / 3e-18 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G070300 [exp] 89 / 4e-18 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G276900 [exp] 86 / 3e-17 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 84 / 1e-16 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G071000 [exp] 83 / 1e-16 AT5G08710 515 / 0.0 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.009G071800 [exp] 84 / 2e-16 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038724 [exp] 713 / 0 AT5G11580 629 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10024239 [exp] 144 / 8e-39 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10008730 [exp] 117 / 1e-29 AT1G27060 132 / 1e-36 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10012474 [exp] 115 / 2e-29 AT1G27060 89 / 2e-21 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 117 / 4e-28 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 110 / 6e-26 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10017581 [exp] 102 / 3e-23 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10029536 [exp] 97 / 5e-21 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10013197 [exp] 94 / 4e-20 AT3G02300 711 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10030712 [exp] 90 / 6e-19 AT3G02300 717 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Potri.018G044400.2 pacid=42800448 polypeptide=Potri.018G044400.2.p locus=Potri.018G044400 ID=Potri.018G044400.2.v4.1 annot-version=v4.1 ATGGAGGGCAATACAGCACTCTCTGGTAAAGTGGTCTCCGTGGCTACTGGTGAAGCTCACTCCCTTATTCTCACAGGAGATGGGCGTGTGTATTCATGGG GTAAAGGAATGTTTGGGCGACTTGGGACTGGTTCAGAAGTGGATGAGCTTTTTCCTGTACAAGTGAAGTTCGAAACTTGTGTAGAAAAAAGACTCAACTT TGTGGGGGTTGCTGCTGGTGCTTATCATAGTCTTGCTCTTGCAGATGATGGATCGGTCTGGTGTTGGGGCTACAACATCTATGGCCAACTTGGTGTTAGT GGAGAGAATTATTCAATGCCACACTTGATGGACCAGTTCCTTGAGTTGGGCTCCCTAGGTTCATTGATAGATCATTCAGAAACAAAGAGTGAAGGACCAC TAAAGATATGCTCTATCAAAGCTGGAGGAATGATGTCTCTAGCAATTGATGATCATGGTGCCCTTTGGATGTGGGGCAATTGCCCGCAACAAAGAAACAA AACTGGAAGTAGCATCTCTTTTGAGAGTAGTTTCATTCCGATTCCTGTTCGTGATTTCCATGGCCACTCTGTTGTGAAGGTGGCATGTGGAAGTGAACAT GTTGTCGCCCTGGTTAGTGCTGGAGAAACATATAAAGGTGAGGATCTAGTATGCTACTCGTGGGGTAATAATAACCATGGCCAGTTGGGTCTGGGAGATA GAGAGAGCAGAGTCCATCCTGAGATTGTTGAAATGTTTAACAAGGACTCTTCTTGGGATGTTTATGAGGTAGCATGTGGAGCATATCACACAGCTTTACT CACTCGCAAAAGGAGAACAGTTGACCCATTAGAAAGTGTGTGTTGGACATTTGGCCTTGGGGATAACGGGCAGCTTGGGCATGGAACTACCCAAAGTGTG CTAAAACCTGAGCCTGTAAAAGAATTGCCAGGACAAGCCTATCTGATCTCTGTTGACTGTGGTTTATTTCACACTAGTGTTGTTTCGTCTGTGGGAGATG TTTGGTCATGGGGAATGGAAAAGGGTCTTGGCCTGTGCCCAGATGCTAGTTTTACTGGAACAGACGCAGGGGATGCTGCTTCTCCCCTACTAATGTCAGG CTATGGAGTAGATGGGCCCATATTTCACAATCCAATTCAAGTTGCCTGTGGGGCTGCCCACACTGTTCTTGTTGCTAATGATGGATATAAGCTTTGGTCA TGGGGCAGGGGTACGAGTGGTGTCCTTGGAAATGGTAAGACGATCAATTGTTTTGCTCCCAGTTTTGTATTATGGCCTCCACTAACAGAGGATTTCAAGC AACCAGAACCGAAAACTGTTGGTGAGGAGAGCAATGGTTCCAAAGCAGTTGCAGAAACAGACAAAAGGTTGTCTTTGGCAATGGAAGAGATAGAGCTCCT TCAGTCAAAACTTTCTATAATGGAACAATATGGTGGCATGCTTCATGGATTGGTTTTTGGCAGACCTTTTACTTACCAAGATATCCCAATCTCATTGCAG AATTCAGGTAATTTTGACATCGCAAAAGAATGGGAGAGCATGTTAGAATCGGCAGATCACAGTAAGCTTCGTAGATTGGAATTGTTCTACCGAGACATGC GTGCAACTATCAAAGACAAGATAATGAAGAGAAGGATTCAGGAGATTATAAAGGAGTGTCTGCCTTCTTCAACTACAGCAAAGTAA
AA sequence Show only first row Show all	>Potri.018G044400.2 pacid=42800448 polypeptide=Potri.018G044400.2.p locus=Potri.018G044400 ID=Potri.018G044400.2.v4.1 annot-version=v4.1 MEGNTALSGKVVSVATGEAHSLILTGDGRVYSWGKGMFGRLGTGSEVDELFPVQVKFETCVEKRLNFVGVAAGAYHSLALADDGSVWCWGYNIYGQLGVS GENYSMPHLMDQFLELGSLGSLIDHSETKSEGPLKICSIKAGGMMSLAIDDHGALWMWGNCPQQRNKTGSSISFESSFIPIPVRDFHGHSVVKVACGSEH VVALVSAGETYKGEDLVCYSWGNNNHGQLGLGDRESRVHPEIVEMFNKDSSWDVYEVACGAYHTALLTRKRRTVDPLESVCWTFGLGDNGQLGHGTTQSV LKPEPVKELPGQAYLISVDCGLFHTSVVSSVGDVWSWGMEKGLGLCPDASFTGTDAGDAASPLLMSGYGVDGPIFHNPIQVACGAAHTVLVANDGYKLWS WGRGTSGVLGNGKTINCFAPSFVLWPPLTEDFKQPEPKTVGEESNGSKAVAETDKRLSLAMEEIELLQSKLSIMEQYGGMLHGLVFGRPFTYQDIPISLQ NSGNFDIAKEWESMLESADHSKLRRLELFYRDMRATIKDKIMKRRIQEIIKECLPSSTTAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11580			Regulator of chromosome conden...		Potri.018G044400 [exp]	0	1
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.004G002800 [exp]	1.73	0.8875
AT4G12710			ARM repeat superfamily protein...		Potri.014G170100 [exp]	2.00	0.8860
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Potri.005G116600 [exp]	5.19	0.8404	HIS1.2
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	6.48	0.8690
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	9.53	0.8637
AT3G26115			Pyridoxal-5'-phosphate-depende...		Potri.010G051200 [exp]	11.83	0.8745
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Potri.017G090500 [exp]	14.31	0.8697
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	25.15	0.8836
					Potri.006G001701 [exp]	27.20	0.7890
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	28.37	0.8451	Pt-KUP3.1

Compare expression of checked genes

Potri.018G044400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.