Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25830 247 / 2e-79 GATA GATA12 GATA transcription factor 12 (.1) AT4G32890 218 / 3e-68 GATA GATA9 GATA transcription factor 9 (.1) AT3G60530 159 / 1e-46 GATA GATA4 GATA transcription factor 4 (.1) AT2G45050 144 / 2e-40 GATA GATA2 GATA transcription factor 2 (.1) AT3G24050 125 / 3e-33 GATA GATA1 GATA transcription factor 1 (.1) AT1G08010 123 / 3e-32 GATA GATA11 GATA transcription factor 11 (.1.2) AT5G66320 121 / 2e-31 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G54810 121 / 2e-31 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT4G34680 120 / 2e-31 GATA GATA3 GATA transcription factor 3 (.1.2) AT1G08000 117 / 6e-30 GATA GATA10 GATA transcription factor 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237700 [exp] 534 / 0 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.001G188500 [exp] 211 / 1e-65 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.002G142800 [exp] 150 / 5e-43 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.014G058600 [exp] 148 / 2e-42 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.003G174800 [exp] 128 / 1e-34 AT3G24050 167 / 6e-51 GATA transcription factor 1 (.1) Potri.001G053500 [exp] 127 / 2e-34 AT3G24050 171 / 4e-52 GATA transcription factor 1 (.1) Potri.009G123400 [exp] 125 / 8e-33 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.004G161500 [exp] 125 / 1e-32 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2) Potri.010G223300 [exp] 124 / 3e-32 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011430 [exp] 231 / 3e-73 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 225 / 3e-71 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10038273 [exp] 205 / 2e-63 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10025829 [exp] 204 / 1e-62 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10028178 [exp] 148 / 6e-42 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10023684 [exp] 131 / 2e-36 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10011762 [exp] 126 / 7e-34 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10031096 [exp] 118 / 1e-32 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10037994 [exp] 124 / 1e-31 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10009227 [exp] 123 / 1e-31 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.018G044900.1 pacid=42801842 polypeptide=Potri.018G044900.1.p locus=Potri.018G044900 ID=Potri.018G044900.1.v4.1 annot-version=v4.1 ATGGAAGCACCAGAATTCTATGGGGCATCCGGGTTTTTCAGCTCACAATTCACAAGTAATGAAAAGCACCACTCTTTGGACTCTACTAATAAGTCCATTG GTGGTGGTGACCATTTCATTGTTGAAGACCTTTTGGACTTCTCTAATGAAGATGATGATGCCATGATAACTGACCCAAACAATAATAATACTATCGTCAC TGCCACCACCAACTCCACGGACTCTTCCACCGTAACTGTCGTTGACAGCTGCAATTCCTCATCTTTCTCGGGCCGTGAGCCTTCTAGCTTTAACGGCGAT ATTGGGTCCCACCACACCAATAATTTCTCTCATCATGACGTTCACTTAGGCAGCGAGCTTTGCGTGCCCTATGATGATTTAGCGGAACTAGAATGGCTGT CGAATTTTGTGGAGGAATCGTTCTCCAGCGAGGACTTGCAAAGGCTTCAGCTAATATCCGGCATGAAAGCTCGGCCAGACGAATCATCCAAGAGTCGACA CTTCCGAACTCATGGAGACACTGATGACAATAACAATGGCGATGTCTCCAATATTAGTAACATTAACAACACAATGTTCAATCCTGAAACGGCTGTCCCC GCTAAGGCTCGGAGCAAACGGTCTCGGGCAGCGCCGGGCAATTGGGCCTCACGCCTTCTTGTGCTCTCTCCCACGACTTCATCCTCCGATACTGAAATTA TTGCTGGGCCGACCCCACATCCGAATTCTGGGAAAAAGACAATTAAGGTTGAGGCGCGGCAGAAGAAAAGAGATGGTGGTGTTGAAGGTTGCGATGGTCG CAAGTGCCTGCATTGTGCCACGGATAAGACGCCGCAGTGGCGGACTGGACCCATGGGGCCAAAGACGCTGTGCAATGCGTGTGGTGTAAGGTACAAGTCG GGCCGGCTTGTGCCTGAGTACAGGCCTGCAGCTAGCCCAACATTTATGCTCACTAAACACTCAAATTCGCACCGTAAGGTGCTTGAGCTCAGGCGACAAA AGGAGATGGTAAGAGCTCAGCAGCAACACCAGCACCAGCAATTTCTTCATCACCATCAGAATATGGTGTTTGGTGTATCAAACGGTGGTGATGATTACTT GATTCACCAACATGTGGGACCCGATTTTAGGCAGATGATCTAG
AA sequence Show only first row Show all	>Potri.018G044900.1 pacid=42801842 polypeptide=Potri.018G044900.1.p locus=Potri.018G044900 ID=Potri.018G044900.1.v4.1 annot-version=v4.1 MEAPEFYGASGFFSSQFTSNEKHHSLDSTNKSIGGGDHFIVEDLLDFSNEDDDAMITDPNNNNTIVTATTNSTDSSTVTVVDSCNSSSFSGREPSSFNGD IGSHHTNNFSHHDVHLGSELCVPYDDLAELEWLSNFVEESFSSEDLQRLQLISGMKARPDESSKSRHFRTHGDTDDNNNGDVSNISNINNTMFNPETAVP AKARSKRSRAAPGNWASRLLVLSPTTSSSDTEIIAGPTPHPNSGKKTIKVEARQKKRDGGVEGCDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKS GRLVPEYRPAASPTFMLTKHSNSHRKVLELRRQKEMVRAQQQHQHQQFLHHHQNMVFGVSNGGDDYLIHQHVGPDFRQMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.018G044900 [exp]	0	1
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	8.24	0.8022
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	9.05	0.7883
AT1G01300			Eukaryotic aspartyl protease f...		Potri.002G171700 [exp]	12.96	0.7783
AT1G38131			O-fucosyltransferase family pr...		Potri.005G173500 [exp]	20.49	0.7558
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Potri.006G000400 [exp]	27.47	0.7821
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	29.12	0.7830
AT2G24230			Leucine-rich repeat protein ki...		Potri.006G185100 [exp]	38.88	0.7396
AT2G43990			unknown protein		Potri.017G002200 [exp]	39.00	0.7569
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Potri.003G136600 [exp]	46.98	0.7763
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.012G128200 [exp]	48.78	0.7399

Compare expression of checked genes

Potri.018G044900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.