Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25790 925 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 522 / 1e-169 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 512 / 6e-166 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 512 / 8e-166 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 502 / 6e-162 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 492 / 2e-158 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 449 / 4e-142 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 446 / 1e-139 Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 436 / 4e-137 HSL1 HAESA-like 1 (.1) AT5G56040 434 / 2e-135 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237400 [exp] 1605 / 0 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 538 / 7e-176 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 532 / 2e-173 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 529 / 3e-172 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.007G009200 [exp] 509 / 1e-164 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G157300 [exp] 487 / 2e-156 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 485 / 1e-155 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 461 / 2e-146 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 455 / 2e-144 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006045 [exp] 1063 / 0 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011609 [exp] 1058 / 0 AT2G25790 857 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 520 / 6e-169 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 509 / 1e-164 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 507 / 9e-164 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10025943 [exp] 496 / 8e-160 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039641 [exp] 498 / 9e-160 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 469 / 3e-149 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 450 / 8e-144 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027221 [exp] 447 / 6e-141 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G045500.2 pacid=42801338 polypeptide=Potri.018G045500.2.p locus=Potri.018G045500 ID=Potri.018G045500.2.v4.1 annot-version=v4.1 ATGGAATCCACAAAAGGGCCTCAACCATGTCCAATGTTGTTGTTCATGCTCTTGTTCTTGTTCTTGAATTCTCGGATGTCGAATGCAGAGAATCAGGAAC TTGAGCTTCTCTTGTCTTTCAAAACTTCACTTAATGACCCTTCCAAGTATCTCTCAAACTGGAATACCTCTGCCACTTTTTGCAATTGGCTAGGAATCAC TTGCACAAACTCCTCTCGCATTAGTGGGATTGAGCTCTCAGGGAAAAACATCTCTGGAAAAATTTCCTCTTTAATCTTCCATTTCCCATATATTCAAACT ATTGATCTCTCAAGCAATCAGCTTTCTGGTAAACTTCCTGATGATATATTCCTTAGCTCGTCACTTAGGTACCTCAATCTTAGCAACAATAATTTCACTG GCCCAATACCAAGTGGCTCAATTCCCCTCCTGGAAACATTAGATCTATCCAATAACATGCTGTCCGGGAAAATTCCTCAAGAAATAGGATCCTTTTTTAG TCTAAAATTTCTTGATCTTGGTGGCAATGCTTTGGTGGGTAAAATTCCTCCCTCGATAACAAAGTTGACAAGTTTGAAGGTCTTTACTTTGGCGTCTAAT CAATTAGTTGGCCAAATTCCACATGAATTAGGCCAAATGAGAAGCTTGAAGTTGATTTACTTGGGCTATAACAATCTTTCTGGTGAAATTCCTACAGAAA TAGGCCAGTTAATTTCTTTGAACCATCTTGATCTTGTCTACAACAATCTCATTGGACAAATCCCATCATCTTTAGGAAACCTCACTGATCTTCAATACCT CTTTCTCTACCAAAATAAATTTACTGGTCCTATTCCTAAATCTATTTTTGGTCTCACGAAGTTGATTTCACTTGATCTTAGTGATAATTTTTTATCAGGT GAGATCCCAGAACTCATTATTCAGTTGAAAAATTTGGAGATTCTTCATCTTTTCTCCAACCACTTCACTGGGAAAATCCCCGTCGCTTTAAGCTCCTTGC CTCGTCTTCAAGTTCTTCAACTTTGGTCTAACAAGTTATCTGGTGAGATTCCAAAAGATCTTGGAAAACATAACAATCTCACTGTCTTAGACCTTTCCAC CAATTCTCTCTCTGGAAGAATACCTGAAGGGTTATGCAGTTCTGGGAATCTCTTTAAGCTCATTCTCTTCTCCAATTCTCTTGAAGGTGAAATACCAAAG AGTTTGAGTGCTTGCAAAAGCATGCGGCGGATACGCCTCCAAGATAACAGCCTGTCTGGTGAATTATCATCAGAATTCACCAAACTTCCACTTGTGTACT TCTTGGACATCTCTGCTAACAAACTTTTGGGCAGGATTGACTCGAGAAAATGGGAGATGCCTTCACTTCAAATGCTGAGTTTGGCAAGAAACAGTTTTTT TGGGGGCTTGCCAGACTCGTTCGGCAGCGACAATCTTGAGAATTTGGACCTGTCTCATAATCAATTCTCAGGTGCTATTCCGAATAAGTTTGGGAGCTTA TCAGAGCTAATGCAACTAAATCTAAGCAAAAACAAGCTCTCTGGTGAAATCCCAGACGAGCTATCTTCATGCGAAAAGCTTGTGAGTTTAGACCTTAGTC AGAATAAGCTCAGTGGCCAAATCCCTGCTGGTTTCGCTGAAATGCCAGTTCTCGGTCAGCTTGATTTGTCATACAATGAACTATCCGGGGAAGTACCAGC CAATTTGGGAAAAGAAGAATCCCTTGTTCAAGTGAACATCTCTCATAATCATTTCCATGGTAGTTTACCCTCCACAGGAGCATTTCTTGCCATAAATGCA AGTGCTGTTGCAGGAAATGATCTTTGCGGCGGTGATAAGACTAGCGGCTTGCCTCCATGCAGAAGGGTGAAGAGTCCTCTGTGGTGGTTTTATGTTGCCT GTAGTCTTGGCGCTCTAGTGTTGCTTGCTCTAGTTGCTTCTGGATTTGTTTTCTTTCGAGGAAAAAGGAATTCGGAACTCAAAAGAGTCGAAAATGAGGA CGGGACATGGGAGCTGCTATTATTCAATTCTAAGGTCTCGAGATCGATAGCAATTGAGGATATTATAATGTCCCTGAAAGAAGAAAATTTGATATCTAGA GGCAAAGAAGGAGCTTCATACAAAGGGAAGTCCATTGCAAACGACATGCAGTTTATCCTAAAGAAAACGAATGATGTGAACTCAATTCCGCCGTCCGAAG TTGCTGAACTTGGCAAGCTCCAGCATCCTAACATTGTCAAGTTATTTGGATTATGCCGGTCCAACAAGGGTGCATATGTTGTGCATGAATACATAGACGG AAAACAATTGAGTGAAGTTCTTCGGAATTTAAGTTGGGAACGACGGCAACAAATTGCAATCGGGATCGCAAAAGCCCTCCGATTCTTGCATTGTTATTGT TCACCGAGAGTTCTTGTTGGTTACTTGTCACCAGGAAAAATTATCGTTGATGGAAAATATGTACCGCATCTCATAGTAAGCCTTCCCGGCTCGCTTTGCA TCGACAACACCAAGTGCTTCATTTCTTCAGCTTATGTTGCTCCAGAAACCAGAGAAACTAAAGACATCTCTGAGAAGAGCGACATGTATGGATTTGGTCT CGTCCTTATTGAATTATTAACCGGAAAAGGCCCGGCGGATGCTGAATTTGGCGTGCACGAGAGCATCGTCAAGTGGGCCCGTTATTGCTACTCGGATTGT CATCTAGATATGTGGATTGATCCAATGATAAGAAGGAATGCATCGATTAATGAGAATGAGATGGTCGAGACGATGAATTTGGCTCTACAATGCACAGCTA CTGAGCCCACTGCACGACCATGTGCAAATGAAGTATCGAAAACCCTAGAGTCTGCTTCGAAGACAAGTTCTTGTGTATTAGGCCTGAAGTTTTCTTCCCT TTTTAAGTATTTTAATTAA
AA sequence Show only first row Show all	>Potri.018G045500.2 pacid=42801338 polypeptide=Potri.018G045500.2.p locus=Potri.018G045500 ID=Potri.018G045500.2.v4.1 annot-version=v4.1 MESTKGPQPCPMLLFMLLFLFLNSRMSNAENQELELLLSFKTSLNDPSKYLSNWNTSATFCNWLGITCTNSSRISGIELSGKNISGKISSLIFHFPYIQT IDLSSNQLSGKLPDDIFLSSSLRYLNLSNNNFTGPIPSGSIPLLETLDLSNNMLSGKIPQEIGSFFSLKFLDLGGNALVGKIPPSITKLTSLKVFTLASN QLVGQIPHELGQMRSLKLIYLGYNNLSGEIPTEIGQLISLNHLDLVYNNLIGQIPSSLGNLTDLQYLFLYQNKFTGPIPKSIFGLTKLISLDLSDNFLSG EIPELIIQLKNLEILHLFSNHFTGKIPVALSSLPRLQVLQLWSNKLSGEIPKDLGKHNNLTVLDLSTNSLSGRIPEGLCSSGNLFKLILFSNSLEGEIPK SLSACKSMRRIRLQDNSLSGELSSEFTKLPLVYFLDISANKLLGRIDSRKWEMPSLQMLSLARNSFFGGLPDSFGSDNLENLDLSHNQFSGAIPNKFGSL SELMQLNLSKNKLSGEIPDELSSCEKLVSLDLSQNKLSGQIPAGFAEMPVLGQLDLSYNELSGEVPANLGKEESLVQVNISHNHFHGSLPSTGAFLAINA SAVAGNDLCGGDKTSGLPPCRRVKSPLWWFYVACSLGALVLLALVASGFVFFRGKRNSELKRVENEDGTWELLLFNSKVSRSIAIEDIIMSLKEENLISR GKEGASYKGKSIANDMQFILKKTNDVNSIPPSEVAELGKLQHPNIVKLFGLCRSNKGAYVVHEYIDGKQLSEVLRNLSWERRQQIAIGIAKALRFLHCYC SPRVLVGYLSPGKIIVDGKYVPHLIVSLPGSLCIDNTKCFISSAYVAPETRETKDISEKSDMYGFGLVLIELLTGKGPADAEFGVHESIVKWARYCYSDC HLDMWIDPMIRRNASINENEMVETMNLALQCTATEPTARPCANEVSKTLESASKTSSCVLGLKFSSLFKYFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25790			Leucine-rich receptor-like pro...		Potri.018G045500 [exp]	0	1
AT5G66600			Protein of unknown function, D...		Potri.007G033100 [exp]	1.00	0.8835
AT4G32785			unknown protein		Potri.018G042000 [exp]	2.44	0.8424
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Potri.001G094700 [exp]	6.70	0.7917
AT5G45030			Trypsin family protein (.1.2)		Potri.011G143200 [exp]	6.70	0.7472
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	7.21	0.7278
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.003G163300 [exp]	7.74	0.8020
AT3G56810			unknown protein		Potri.016G024600 [exp]	10.58	0.7832
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.007G007400 [exp]	14.45	0.7715
AT2G25790			Leucine-rich receptor-like pro...		Potri.006G237400 [exp]	15.68	0.7007
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.003G116000 [exp]	16.43	0.7406	Pt-SMO1.1

Compare expression of checked genes

Potri.018G045500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.