Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15215 195 / 3e-62 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein AT3G18380 181 / 2e-55 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189200 [exp] 208 / 2e-67 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.011G097500 [exp] 178 / 2e-54 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.001G373300 [exp] 179 / 4e-54 AT3G18380 369 / 7e-127 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.002G216900 [exp] 45 / 2e-05 AT4G25330 87 / 9e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038276 [exp] 199 / 6e-63 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10017944 [exp] 191 / 2e-59 AT3G18380 418 / 7e-147 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10013684 [exp] 191 / 3e-59 AT3G18380 416 / 4e-146 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10025826 [exp] 165 / 8e-50 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10014151 [exp] 162 / 3e-48 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10005480 [exp] 149 / 1e-45 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10037564 [exp] 112 / 2e-30 AT1G15215 130 / 2e-37 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10006038 [exp] 89 / 2e-22 ND 40 / 1e-04
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF16719 [poplar] [flax] SAWADEE SAWADEE domain
Representative CDS sequence Show only first row Show all	>Potri.018G046200.1 pacid=42802177 polypeptide=Potri.018G046200.1.p locus=Potri.018G046200 ID=Potri.018G046200.1.v4.1 annot-version=v4.1 ATGGATCGTCTCCGCCGAAGACAGAGACCGGTGTTCTCTGGGTTCACAACGGCTGAGATAGAGAAGATGGAGAGATTGCTAAAGGAATCAGACCAACAAC TGGACAAGGAGTTCTTTCAGAAAGTTGCCAGGAGATTTAGCTCCTCTGCTGCCCGGGCTGGGAAACCTGTTGTTAAATGGACTGAGGTACAAAGTTGGTT CAGAACTAGGCAGCAGGATTGCCTGTCCAAAGTTGCATCTTCAACTGATGCTTCAAATCATGATTCTCCACTCCCGAAGTCTAATTCTTTTAATAAGACA AAAGAAAGTTCTCGAATTCCTGAAGGAGAAACAATCCCAGATTTGTCAGAGTTGAAATTTGAGGCAAGGTCATCAAAAGATGGGGCGTGGTATGATGTTG ACATGTTCCTCTCTCATAGAATTCTTGCATCTGGGGATGCTGAAGTTCGTGTTAGATTTGTTGGATTTGGGGCTGAGGAGGATGAGTGGGTCAATGTAAA AAATGCAGTGCGAGAACGTTCAATACCTCTTGAGCATTCAGAATGCCACAAATTGAAGGTCGGAGATTTAGTGTGCTGCTTTCAGGAAAGAAGGGACCAG GCACAGTACTTTGACGCCCACATTGTCGACATTCAAAGGAAAACACATGACATTAGAGGTTGCCGGTGCCTTTTCTTGGTTCGATATGATCATGACAACA CTGAGGAAAGAGTCCGTTTGAGGAGGTTATGTTGCAGGCCGGCATAA
AA sequence Show only first row Show all	>Potri.018G046200.1 pacid=42802177 polypeptide=Potri.018G046200.1.p locus=Potri.018G046200 ID=Potri.018G046200.1.v4.1 annot-version=v4.1 MDRLRRRQRPVFSGFTTAEIEKMERLLKESDQQLDKEFFQKVARRFSSSAARAGKPVVKWTEVQSWFRTRQQDCLSKVASSTDASNHDSPLPKSNSFNKT KESSRIPEGETIPDLSELKFEARSSKDGAWYDVDMFLSHRILASGDAEVRVRFVGFGAEEDEWVNVKNAVRERSIPLEHSECHKLKVGDLVCCFQERRDQ AQYFDAHIVDIQRKTHDIRGCRCLFLVRYDHDNTEERVRLRRLCCRPA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	0	1
AT5G26610			D111/G-patch domain-containing...		Potri.013G002100 [exp]	1.73	0.7514
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.002G257100 [exp]	6.63	0.7551
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	8.83	0.7246
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	9.79	0.7465
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.002G181700 [exp]	10.00	0.7269
AT4G26190			Haloacid dehalogenase-like hyd...		Potri.015G059000 [exp]	10.95	0.6558
					Potri.001G014050 [exp]	13.67	0.6767
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.013G062500 [exp]	14.96	0.6804
AT2G43210			Ubiquitin-like superfamily pro...		Potri.007G123800 [exp]	16.49	0.6770
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Potri.011G089500 [exp]	18.33	0.7154

Compare expression of checked genes

Potri.018G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.