Plant FIBer expression Database

Potri.018G046700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25740 574 / 0 ATP-dependent protease La (LON) domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G236400
[exp]
808 / 0 AT2G25740 587 / 0.0 ATP-dependent protease La (LON) domain protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005481
[exp]
613 / 0 AT2G25740 588 / 0.0 ATP-dependent protease La (LON) domain protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0178 PUA PF02190 LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence
>Potri.018G046700.2 pacid=42800970 polypeptide=Potri.018G046700.2.p locus=Potri.018G046700 ID=Potri.018G046700.2.v4.1 annot-version=v4.1
ATGGAGGGGGATGATAGAATTTTAGAGGCTGAGAGGCACCAGATCGAGCAGATTCGACAGCTTGATTTCGAAGAATTACAAGTCGAAGAAGTCGACGATG
ACGACTCCGACTCCTCCCTCGATGATCGTGATGCCTCTGGTGCTGGTTCATCTGATGATTTCACCTTCAACACTTGTTTGGCTTCATTGCATACTTATCT
TGGCGAGGTTGAAGACACTCACCATAGACTTGCTTTCTTGGATGGAGGTGCCATTTTAAACCTTCCATTGTTCTATCTTGAAGGAGTTGTTCTTTTCCCA
GAGGCTACACTTCCTTTGAGAGTTATTCAACCCAATTTTATTTCTGCTGTTGAGAGGGCATTGGTTCAAGTTGATGCTCCTTATACTGTAGGTGTGGTTC
GTGCATACAGGGATTCTGACAACAGACGATTAAGGTTTGCAACTGTTGGAACAACTGCAGAGATTCGGCAATATCGGCGGTTAGAGGATGGCTCACTGAA
TGTTGTCACTCGTGGCCAGCAGCGGTTTCGTCTAAAACGACGTTGGATTGATGTGGAAGGAGTGCCCTGTGGAGAGGTTCAAATCATTCAGGAAGACATG
CCATTAAGGACACCCAAGGATGCTTTTGGAAAATTGGCACCATTAAGTAATCTGCGTAGTCATAAATTCTCATCTGTGCTTCCTTCAACTTTTTCATCAG
TTGGATATGGGCATAGCGACAATGATTCAGAGGCAAATTCAGAGGAAAGCTTTGAGACTGAGCTCTCCCTGGCAGAAAGGAGAATTCATCAATCTGCATT
GAATTCCTGTTATGGCTATGACATGATGGATGAATCAATGAGCAGTGATGATGACAAGTTCATGAGTCGGTCAGAAGAAATGAGATCGAGAAGATCTCAC
CTAAGTGAGACAGAAGGGTCATTGTATTTGGACACTGGGAAAAATCTGGGCAATACTACCTTGGAGATTGGGAATAGTTCTGGTTTAGTAAAGAAAGGGG
AAGGATCAAAGAGATGTTGGAAAAATACTGATTTAAACCAGTTTCGAAGGGTTCCAAGAACTTTCTGGCCCTACTGGGTATACAGTATGTATGACTCCTA
TTGTCTTGCTGAAAAAGCGGCAGATATGTGGAAACAGATTGTTGGGGCGCCAAGCATGGATGGTCTTGTGAGAAAGCCTGATCTCTTATCATTTTACATT
GCAAGTAAAATTCCCGTGTCTGAAGAGACCAGGCAGGAGCTTCTGGAGATTGATGGCATTTCATATAGACTGCGTCGGGAAATTGATTTACTTGAAACTT
TTGACCTTGTTCGATGTAAAACCTGTAAGATTGTCATTTCTCGGCGGAGTGATATGTTGGTGATGTCGAGTGAAGGTCCTCTTGGTGCTTACGTGAATCC
ACTTGGTTATGTACATGAGATAATGACACTCCAGAAAGCAAATGGGCTAGCACTTATAGGGCGAGCCACTGCAGAGTACAGCTGGTTTCCTGGGTATGCC
TGGACAGTTGCGGAATGTGCCTCCTGTGAGATCCAAATGGGTTGGCTTTTTACTGCCACGAAGAAGAAGTTGAAGCCTCAATCTTTTTGGGGGATACGGA
GTTCCCAGGTTGCTGGTGATACATGCTAG
AA sequence
>Potri.018G046700.2 pacid=42800970 polypeptide=Potri.018G046700.2.p locus=Potri.018G046700 ID=Potri.018G046700.2.v4.1 annot-version=v4.1
MEGDDRILEAERHQIEQIRQLDFEELQVEEVDDDDSDSSLDDRDASGAGSSDDFTFNTCLASLHTYLGEVEDTHHRLAFLDGGAILNLPLFYLEGVVLFP
EATLPLRVIQPNFISAVERALVQVDAPYTVGVVRAYRDSDNRRLRFATVGTTAEIRQYRRLEDGSLNVVTRGQQRFRLKRRWIDVEGVPCGEVQIIQEDM
PLRTPKDAFGKLAPLSNLRSHKFSSVLPSTFSSVGYGHSDNDSEANSEESFETELSLAERRIHQSALNSCYGYDMMDESMSSDDDKFMSRSEEMRSRRSH
LSETEGSLYLDTGKNLGNTTLEIGNSSGLVKKGEGSKRCWKNTDLNQFRRVPRTFWPYWVYSMYDSYCLAEKAADMWKQIVGAPSMDGLVRKPDLLSFYI
ASKIPVSEETRQELLEIDGISYRLRREIDLLETFDLVRCKTCKIVISRRSDMLVMSSEGPLGAYVNPLGYVHEIMTLQKANGLALIGRATAEYSWFPGYA
WTVAECASCEIQMGWLFTATKKKLKPQSFWGIRSSQVAGDTC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25740 ATP-dependent protease La (LON... Potri.018G046700
[exp]
0 1
AT4G32600 RING/U-box superfamily protein... Potri.006G247000
[exp]
3.74 0.7603
AT4G27650 PEL1 PELOTA, Eukaryotic release fac... Potri.005G204500
[exp]
4.89 0.7348 PEL1.2
AT4G27780 ACBP2 acyl-CoA binding protein 2 (.1... Potri.015G010200
[exp]
6.32 0.6617 ACBP1.2
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.011G071900
[exp]
8.83 0.7217
AT3G54620 bZIP BZO2H4, ATBZIP2... BASIC LEUCINE ZIPPER O2 HOMOLO... Potri.005G217500
[exp]
27.20 0.6464
AT5G60910 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.... Potri.012G062300
[exp]
28.91 0.6416
AT1G55150 DEA(D/H)-box RNA helicase fami... Potri.003G038300
[exp]
33.09 0.7014
AT5G05610 Alfin AL1 alfin-like 1 (.1.2) Potri.006G100900
[exp]
38.67 0.6219
AT5G64500 Major facilitator superfamily ... Potri.001G286600
[exp]
39.11 0.6101
AT3G52190 AtPHF1, PHF1 phosphate transporter traffic ... Potri.008G029200
[exp]
39.59 0.6334

Potri.018G046700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.