Plant FIBer expression Database

Potri.018G047150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G047150.1 pacid=42801198 polypeptide=Potri.018G047150.1.p locus=Potri.018G047150 ID=Potri.018G047150.1.v4.1 annot-version=v4.1
ATGGTATCGAGCAGCATTACCGAATTCCCCTTCCTCTCCTTCCCCGTCTCTGTTAGTAGAGATGACAATGAATATGTCAGAGGTTTGGGGACTGGAAAGC
TAAAGGAGGAAGAAAGCTATAAAGTGGTCGATTCAATCGCTCGAAGTCCTGCACAAGAAGAAAAGAGAGAAGTTAGAAAGGTCAGAAAAAGTGGAAGAGA
AAGGGGCAGGTATGAAGGGTCAGGATGTTACCTGGGAATGGGAGAAACAGATGGACAGTTGGATGGAAAGGAAGACTGCATGGAGGACACGTGGATTCCA
CTCAGGAAACAAACGACATATCAAGCACAGACAGTCCAAGCAACGACAGCGTTTCAAGAGTCAAGCAAAAGACAGCAACAATTAAGGAAAACAGATGATA
AAACAATCAGAAGATTGAAATAG
AA sequence
>Potri.018G047150.1 pacid=42801198 polypeptide=Potri.018G047150.1.p locus=Potri.018G047150 ID=Potri.018G047150.1.v4.1 annot-version=v4.1
MVSSSITEFPFLSFPVSVSRDDNEYVRGLGTGKLKEEESYKVVDSIARSPAQEEKREVRKVRKSGRERGRYEGSGCYLGMGETDGQLDGKEDCMEDTWIP
LRKQTTYQAQTVQATTAFQESSKRQQQLRKTDDKTIRRLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G047150
[exp]
0 1
AT1G14060 GCK domain-containing protein ... Potri.013G099100
[exp]
8.83 0.6491
AT3G26750 unknown protein Potri.007G019800
[exp]
20.00 0.5994
AT3G56030 Tetratricopeptide repeat (TPR)... Potri.008G141700
[exp]
23.40 0.6779
AT3G25150 Nuclear transport factor 2 (NT... Potri.002G246600
[exp]
33.40 0.6721
Potri.005G247051
[exp]
39.87 0.6116
AT2G18470 AtPERK4, PERK4 proline-rich extensin-like rec... Potri.007G027000
[exp]
41.42 0.6292
AT5G44360 FAD-binding Berberine family p... Potri.011G161800
[exp]
41.91 0.6448
AT2G34400 Pentatricopeptide repeat (PPR-... Potri.003G041650
[exp]
47.90 0.5549
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.010G187300
[exp]
58.14 0.5442
AT3G59470 FAR1_related Far-red impaired responsive (F... Potri.008G076800
[exp]
61.42 0.5899

Potri.018G047150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.