Plant FIBer expression Database

Potri.018G047400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74530 352 / 8e-122 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023603
[exp]
395 / 5e-139 AT1G74530 363 / 2e-126 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G047400.5 pacid=42801626 polypeptide=Potri.018G047400.5.p locus=Potri.018G047400 ID=Potri.018G047400.5.v4.1 annot-version=v4.1
ATGGCAAGGGCATTTGCAGTTGGTGTTGGGAATTGGTGGAGCCATTCCAAAACTGTGATTTTAATTTGGTGTATTTGCATCTTCTTCTACATCCTTTTCT
TCCATATGGCTCTCCAAAATTCCTCCTCTTCGTCGTCTTCAGATAAATATTCGGAGCAGCGGTCAAGGTTGTATGATAAAATGGAAAGGGATTTGGATGA
GCGTGGAGCAGCTTTCCTCAAACATGGTGAAACTTCTCAGTCACTGTTGCTCTCGGATATTTTCACCCTTAAGGATGGATCTGTAACACCTGTGCTCAAG
GCTGCAAACCCTCCTGTCCGGGCTAATGTTTTGTATCTTAGCCCAGAATACTCGGTGCCCATCTCGGACAATGTAAAGAATACATTTAGTTCATACTTTG
ATAAAGTTTGGTTTCAGAATTCTAGTGTATACCATTCTAGCATGTTTCATGCCTCACATCATATTGAACCTGTTCCTGTCACTGAAGATGAGATCGAAGC
TGAAGTAAATGCTGTCAAAGCTGTTGCAGACTTCCTCTGCCCCTTAAAAATTGTCTTGGATAGAGTGGTTTTGACTTCAACTGGCGTGCTTCTGGGATGC
TGGCAGGTGATCTCTGGAACAGATCCCTTAACCATTCGGGCTAAACTGAAAACTGCACTTCCACATGCCCCAAAGAAGCAACTCTATGATGATGCTATTC
TACACACATCATTTGCAAGGCTTTTGGGTCATCCTAAATCTCCTCCCATGGAGCCTTTAGATGAACTCCGATTTTTCCATGAGCTTGTTGCCAGACTAAA
CGATAAAATCCGTGGATTTGAGGCAGTTGTTTCTGAACTCTGGTATGTGGAGGAATATGATGTGTTAGCGCTTGCTTTGGACGGAAGAATGAAGGTCAGC
AGGTTCAAACTCGGTTGCAGCAGAACCTAA
AA sequence
>Potri.018G047400.5 pacid=42801626 polypeptide=Potri.018G047400.5.p locus=Potri.018G047400 ID=Potri.018G047400.5.v4.1 annot-version=v4.1
MARAFAVGVGNWWSHSKTVILIWCICIFFYILFFHMALQNSSSSSSSDKYSEQRSRLYDKMERDLDERGAAFLKHGETSQSLLLSDIFTLKDGSVTPVLK
AANPPVRANVLYLSPEYSVPISDNVKNTFSSYFDKVWFQNSSVYHSSMFHASHHIEPVPVTEDEIEAEVNAVKAVADFLCPLKIVLDRVVLTSTGVLLGC
WQVISGTDPLTIRAKLKTALPHAPKKQLYDDAILHTSFARLLGHPKSPPMEPLDELRFFHELVARLNDKIRGFEAVVSELWYVEEYDVLALALDGRMKVS
RFKLGCSRT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74530 unknown protein Potri.018G047400
[exp]
0 1
AT5G58575 unknown protein Potri.001G279700
[exp]
7.48 0.7308
AT4G14600 Target SNARE coiled-coil domai... Potri.005G159600
[exp]
8.71 0.7455
AT1G80260 EMB1427 embryo defective 1427, Spc97 /... Potri.014G184701
[exp]
11.48 0.7451
AT4G14660 NRPE7 RNA polymerase Rpb7-like, N-te... Potri.010G077200
[exp]
24.73 0.7366
AT3G07560 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY... Potri.017G018400
[exp]
34.05 0.6897
AT3G46630 Protein of unknown function (D... Potri.014G023200
[exp]
39.24 0.6962
AT1G26550 FKBP-like peptidyl-prolyl cis-... Potri.008G089900
[exp]
41.26 0.6969
AT5G59000 RING/FYVE/PHD zinc finger supe... Potri.001G246700
[exp]
41.83 0.6712
AT2G33620 AT-hook AT hook motif DNA-binding fami... Potri.005G256500
[exp]
41.85 0.6980
AT1G30845 unknown protein Potri.005G235800
[exp]
42.89 0.7044

Potri.018G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.