Potri.018G047500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G43920 1518 / 0 DCL3, ATDCL3 dicer-like 3 (.1.2.3)
AT1G01040 774 / 0 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
AT5G20320 662 / 0 DCL4, ATDCL4 dicer-like 4 (.1.2)
AT3G03300 641 / 0 ATDCL2, DCL2 dicer-like 2 (.1.2.3)
AT3G20420 118 / 5e-28 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1)
AT4G15417 110 / 3e-26 ATRTL1 RNAse II-like 1 (.1)
AT5G45150 108 / 2e-23 RTL3 RNAse THREE-like protein 3 (.1)
AT1G16280 55 / 4e-07 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
AT3G58570 55 / 5e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT1G35530 55 / 5e-07 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G181400 769 / 0 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Potri.006G188800 681 / 0 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2)
Potri.008G075900 664 / 0 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3)
Potri.010G181400 662 / 0 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3)
Potri.006G218850 133 / 1e-36 AT3G43920 79 / 4e-19 dicer-like 3 (.1.2.3)
Potri.002G226700 135 / 2e-34 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1)
Potri.011G086700 120 / 4e-29 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1)
Potri.003G217800 57 / 8e-08 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.013G109600 56 / 2e-07 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016367 2050 / 0 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3)
Lus10019757 2019 / 0 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3)
Lus10005142 509 / 8e-154 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Lus10019588 456 / 2e-137 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2)
Lus10030176 404 / 2e-120 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Lus10030177 371 / 1e-111 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Lus10036447 332 / 2e-93 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3)
Lus10019587 201 / 1e-54 AT5G20320 556 / 0.0 dicer-like 4 (.1.2)
Lus10005141 164 / 1e-43 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Lus10040013 150 / 9e-39 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00270 DEAD DEAD/DEAH box helicase
CL0023 P-loop_NTPase PF00271 Helicase_C Helicase conserved C-terminal domain
CL0539 RNase_III PF00636 Ribonuclease_3 Ribonuclease III domain
CL0638 PAZ PF02170 PAZ PAZ domain
CL0196 DSRM PF03368 Dicer_dimer Dicer dimerisation domain
Representative CDS sequence
>Potri.018G047500.6 pacid=42801363 polypeptide=Potri.018G047500.6.p locus=Potri.018G047500 ID=Potri.018G047500.6.v4.1 annot-version=v4.1
ATGGATACTGCAATGCCAGACCATGATCCTCTCAAGAGAAGCTTTGGTGACATGATGGTCAACAACAACAGCTCTTCGAGCTGTCTTGCTATGGATACTT
CCAATGGTATTACTGATCATAATGACACCACCCCACAAGGACTAGCTTCTGTTCTTAGTAATCATAAGGAGTTTTATCCAAGAGGGTATCAGTCAAAGGT
TTTTGAGGTGGCTGTTAAGAGGAATACAATTGCTGTGCTGGAAACAGGAGCTGGAAAGACAATGATTGCTGTTATGTTAATTAAACAGATTGGTCAAGCT
GTCTTTTACAGTGGTGTTAAGAGATTGATTCTTTTCTTAGCTCCAACAGTTCATCTTGTTAATCAGCAATATGAAGTCATTAAATCTCAAACAAATTTTA
GAGTGGGAGAGTACTATGGAGCTAAGGGAATAGATGAGTGGTCTCTGAAGTCCTGGGAGAAGGAAATTGATGAGCACGATGTGTTGGTTATGACACCCCA
GATCCTCTTGGATGCCTTAAGAAAGGCATTTTTGAATCTAAAAATGGTATCCTTGTTAATACTTGACGAGTGTCATCGTTCCACCGGTAACCATCCTTAT
AAGAAAATTATGAAGGATTTCTATCACAAAATGGAGAATAAGCCAAAGGTTTTTGGAATGACAGCATCTCCTGTAGTTAGAAAAGGTGTCTCGTCTGCCA
TGGACTGTGAGGATCAACTAGCAGAACTTGAGAGTGTATTGGATTCTCAGATTTATACTATTGAAGACAGGGCAGAGGTGCATGTCTATGTTCCCTCTGC
AAAAGAATTATGTAGATTTTATGACAAAGCATGGTGTTCTTATGTGGAGCTGAAAGATAAGATTGAAGCTTCATGGTCCAAGTTTGATGCTTCAATGTTA
GCTTTGCAAGGCTCAACACAAAGTTGTTACAAAGATATGGATGATAAGCTTAAAGCAACGAGAAAGCAGTTGTCCAAGGACCACGCAAAGATTTTGAATT
GCCTAGAAGATCTTGGCCTCATATGTGCTTATGAGGCCATCAAGGTTTGTCTAGAGAATGCTGGTAACCCCACTGGTGAATGCAAATTATATCAAGAAAT
TTCTTTGCAGTGTAGATATTTCCTTGAGGATGTGTTACATATAATTGGTGAATCTTTGCTGCATGGTGATAATTTCTCTTTGGATCATGGGTTTGACTGT
TCAGCAGCATTGGGTTTTGGCTACATATCCCCCAAACTACATGAACTTCTCCAACTTTTTCTATCATTTGGAGAAGCTAGGGAAGTATTGTGCCTCATTT
TTGTTGAAAGAATTATTACAGCGAAAGTGGTTGAAAGATTTATGAAGAAAGTTGAGGTTTTAGCACATTTCACTGTTTCATATTTGACTGGAACTAATGC
ATCAGCTGATGCACTGGCCCCAAAAATGCAAATGGAGACCTTGGAATCATTTCGCTCTGGGAAGGTCAATCTATTATTTGCCACTGATGTGGTGGAGGAG
GGAATTCATGTGCCAAACTGCTCCTGTGTAATACGTTTTGATCTGCCTAAGACAGTCCGCAGTTATGTCCAGTCTCGGGGACGAGCTCGACAAAATAATT
CCCACTTTATCACCATGCTTGAAAGGGGAAACACCAAACAACGGGATCAGCTATTTGAAATCATTAGAAGTGAGTGGTCAATGACAGATACAGCTATAAA
TAGAGATCCTAATGTATGGAATCTGAAAGCATGTGCTTCAGAAGCAGCAAAGGCTTATGTGGTGGATGTGACAGGAGCATCAGTAACTGCAGACTCTAGT
GTTAGCCTCATACATCGATATTGTCAACACCTCCCTGGCGACAGGTACTACACACCAAAGCCAACTTTTCAGTTTGAAGTTTTTGAACAGTCTTGCCGCT
GTGCAATGAAGCTACCTCCTAATGCAGCATTTCAAACATTAGTTGGTCCAACATGTAGGAATCAACAATTAGCAAAGCAGCTTGTATGCTTGGAAGCATG
TAAGAAATTGCATCAAATGGGTGCTTTAGATGATCATCTTCTGCCATCAGTTGAAGAGCCTTCAGAAATTGCTGTTGTTAAAAGCAAGTCAACATCTGCA
GGTGCAGGAACTACAAAAAGGAAGGAATTGCATGGGACAGCTTGCATTCATGCGTTATCCGGAAGTTGGGGAGAGAAACTTGATGGAGCCACTTTTCATG
CATACAAGTTTGATTTCTCTTGCTCCATTGTCAGTCAGATCTATTCTGGATTTATTCTTCTCATTGAGTCAAAGCTCGATGATGATGTGGGAAACATTGA
GTTGGATCTTTATTTGGTTGCAAAGATAGTCAAGTCTTCTATTTCTTCATGTGGAGTAGTTCACTTGGATGCTGCACAGATGACAAAAGCAAAACGGTTT
CAAGAATTCTTTTTCAATGGCTTGTTTGGAAAGTTGTTTACTGGATCTAAATCATCTAGGGAGTTCTTACTTCAGAAAGAAACAACATTACTGTGGAGTC
CCTCAAACATGTATCTGCTTCTACCACTAGAGCCATGGAGCATTTCCAGTAATGATTGGTGTAAAATAGATTGGAAAGGAATTGAAGCTTGCTCATCTGT
GGTAGAATACTTGAAGAACTCTTTTTTGGCTGCTCGGTCTTACAGTGGTGGAGGAAATCCATTACCTGATAATGTTCAGTCATCCACCATAGAATGCAAT
GGTACAAATTTAATCCATTTTGCTAATGCTTTAGTCAACGTAGAGAACATTAAAGATATGGTGGTACTGGCAATCCACACGGGAAGAATCTACTCCATTG
TTAAAGTCGTGAACGATTCATCTGCGGAGAGTGCTTTTGAGGGAAATGCTGATAATGTGACAGAGTTTTCTACATACACAGAGTACTTCAACAAAAGGTA
CGGAATTGTGCTGATGCATCCAGGACAGCCTCTGTTGCGGTTAAAGCAAAGCCATAACCCACACAATCATCTTGTAAACTTTAATGATGAAGGTGATTCA
AAAGATGGCATGGTTGGCAGAAAACAGCAGCAGCATGTGCATATGCCACCAGAGCTTTTGATCAAGATTGATGTTCCTATCAGTGTTGTAAAATCAATTT
ATCTGATGCCATCTTTGATGCACCGTCTTGAGTGCCTGATGTTGGCCAGTCAACTTAGACAAGAGATTGATTGTCATGCTCCTAATTTTTACATCCCAAG
CTCATTGATTCTGGAAGCGATAACAACACTTAGATGCTGTGAAAGTTTTTCGATGGAGCGACTGGAGTTGCTAGGGGACTCAGTTCTAAAGTATGCTGTC
AGCTGCCACCTATTTTTAAAATATCCCAATAAACATGAAGGCCAGTTATCCTCATGGCGCTCAGGGGCTGTTTGTAATTCAACCCTACATAAATTGGGAA
CAGATTGTAAAGTACAGGGATATATACTAGACAGTGCATTTGATCCCCGTCGTTGGGCTGCTCCTGGACAGAAATCTGTACGTACTCCTGCTCCTTGCAA
ATGTGGGGTTGATACTTTAGAAGTACCATTGGATCGTAAGTTCCAAACCGAAAGCGCAATTGTTAAGGTTGGAAAACCTTGTGATTCAGGCCACCGATGG
ATGGGTTCCAAAACCATATCAGATTGTGTTGAATCTGTCATAGGGGCATACTATGTCAGTGGTGGATTGATTGCTGCAATTCATGTGATGAAGTGGTTTG
GCATTAATGCTGAACTTGATCCTTCACTAATAAGCGAAGCAATTACGAGTGCATCTCTACGATCTTATATCCCTAAAGAAGATGAGATTAAGAGTCTAGA
GTCAAAGCTTGGGTATACCTTCGGTGTCAAGTTTGTCTTGCAGGAGGCCATGACTCATGCATCTATACAAGAACAGGGTGTTACATACTGTTACCAGAGG
CTTGAATTTCTTGGTGATTCTGTGTTGGACTTGCTTATAACATGGCATCTCTATCAGAGCCACACAGATGTTGATCCTGGCGAGCTGACTGACTTGCGCT
CAGCTTCTGTTAACAATGATAACTTTGCTCAAGTTGCTGTGAAACAAAACCTATATACCCATCTTCTTCATTGTTCTACACTCCTTCAAAGTCAAATAAC
AGAATATGTAAATTCTTTTCATGAATCTGATCAAGGCACAAAGGCTCCCAAGGCTCTTGGAGACCTGATTGAAAGCATTGCAGGGGCATTATTAATTGAT
ACAAAGTTCAATCTCGATGGTGTGTGGAGAATATTCAAGCCCTTGTTATCTCCAATTGTAACCCCTGAGAAACTTGAGCTGCCTCCACTGCGTGAACTTG
TTGAATTATGTGACTCTATAGGGGTTTTTGTAAAAGAAAAATGTACCAAGAAAGCTGAGATGGTTCACGCCCAGCTTTGGGTACAGCTGGACAACGAGCT
CTTGTCTGGAGAGGGGTACGAGAAGAACAGGAAAGCAGCTAAAGGAAAAGCAGCTTCTTGTTTGTTGAAGAAGCTCCAGAAAAGAGGCATCGTATACTCA
CGTGGAGGTTCAAAGAGGAGGAAACAGGACACTGACCCTGTTGTTGATTCAAGTTCCCTTGGCTTCTTAGAAAGTGAAGATTTTTCTGGAAAAACAAAGC
CAAAAAAGCAGAAAATAGAAAACCAAGTGCCCGGAGATTCAAATACAGATTGTTCCCCTGCCATCAGTCCTAGTCATGGTCCCCCAGTTATTGAGTCGAT
TAACAAGAAGAAAGGAGGACCTCGTACTAGTCTTTATGATCTCTGTAAGAAAGTTCAATGGACAATGCCTACATTTGACACAACAGAAACGAAATCCAGA
ACTGCAATTGAATTTGGTGAAGGCCCTGATAAAAGGACGGGATTTAACAGTTATGTATCAAAAATCATCATGAACATACCGTCGTATGGCGTTGTTGAAT
GTGCGGGAGAGGCTAGTGCTGATAAGAAGACCTCATATGACTCTGCGGCACTTGCAATGCTTAATGAGCTTGAAAAACGGGGACAGCTCATCATTGATGA
ATCAAAATAA
AA sequence
>Potri.018G047500.6 pacid=42801363 polypeptide=Potri.018G047500.6.p locus=Potri.018G047500 ID=Potri.018G047500.6.v4.1 annot-version=v4.1
MDTAMPDHDPLKRSFGDMMVNNNSSSSCLAMDTSNGITDHNDTTPQGLASVLSNHKEFYPRGYQSKVFEVAVKRNTIAVLETGAGKTMIAVMLIKQIGQA
VFYSGVKRLILFLAPTVHLVNQQYEVIKSQTNFRVGEYYGAKGIDEWSLKSWEKEIDEHDVLVMTPQILLDALRKAFLNLKMVSLLILDECHRSTGNHPY
KKIMKDFYHKMENKPKVFGMTASPVVRKGVSSAMDCEDQLAELESVLDSQIYTIEDRAEVHVYVPSAKELCRFYDKAWCSYVELKDKIEASWSKFDASML
ALQGSTQSCYKDMDDKLKATRKQLSKDHAKILNCLEDLGLICAYEAIKVCLENAGNPTGECKLYQEISLQCRYFLEDVLHIIGESLLHGDNFSLDHGFDC
SAALGFGYISPKLHELLQLFLSFGEAREVLCLIFVERIITAKVVERFMKKVEVLAHFTVSYLTGTNASADALAPKMQMETLESFRSGKVNLLFATDVVEE
GIHVPNCSCVIRFDLPKTVRSYVQSRGRARQNNSHFITMLERGNTKQRDQLFEIIRSEWSMTDTAINRDPNVWNLKACASEAAKAYVVDVTGASVTADSS
VSLIHRYCQHLPGDRYYTPKPTFQFEVFEQSCRCAMKLPPNAAFQTLVGPTCRNQQLAKQLVCLEACKKLHQMGALDDHLLPSVEEPSEIAVVKSKSTSA
GAGTTKRKELHGTACIHALSGSWGEKLDGATFHAYKFDFSCSIVSQIYSGFILLIESKLDDDVGNIELDLYLVAKIVKSSISSCGVVHLDAAQMTKAKRF
QEFFFNGLFGKLFTGSKSSREFLLQKETTLLWSPSNMYLLLPLEPWSISSNDWCKIDWKGIEACSSVVEYLKNSFLAARSYSGGGNPLPDNVQSSTIECN
GTNLIHFANALVNVENIKDMVVLAIHTGRIYSIVKVVNDSSAESAFEGNADNVTEFSTYTEYFNKRYGIVLMHPGQPLLRLKQSHNPHNHLVNFNDEGDS
KDGMVGRKQQQHVHMPPELLIKIDVPISVVKSIYLMPSLMHRLECLMLASQLRQEIDCHAPNFYIPSSLILEAITTLRCCESFSMERLELLGDSVLKYAV
SCHLFLKYPNKHEGQLSSWRSGAVCNSTLHKLGTDCKVQGYILDSAFDPRRWAAPGQKSVRTPAPCKCGVDTLEVPLDRKFQTESAIVKVGKPCDSGHRW
MGSKTISDCVESVIGAYYVSGGLIAAIHVMKWFGINAELDPSLISEAITSASLRSYIPKEDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQR
LEFLGDSVLDLLITWHLYQSHTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQGTKAPKALGDLIESIAGALLID
TKFNLDGVWRIFKPLLSPIVTPEKLELPPLRELVELCDSIGVFVKEKCTKKAEMVHAQLWVQLDNELLSGEGYEKNRKAAKGKAASCLLKKLQKRGIVYS
RGGSKRRKQDTDPVVDSSSLGFLESEDFSGKTKPKKQKIENQVPGDSNTDCSPAISPSHGPPVIESINKKKGGPRTSLYDLCKKVQWTMPTFDTTETKSR
TAIEFGEGPDKRTGFNSYVSKIIMNIPSYGVVECAGEASADKKTSYDSAALAMLNELEKRGQLIIDESK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G43920 DCL3, ATDCL3 dicer-like 3 (.1.2.3) Potri.018G047500 0 1
AT1G02080 transcription regulators (.1.2... Potri.002G143000 1.41 0.8833
AT2G36490 DML1, ROS1 REPRESSOR OF SILENCING1, demet... Potri.006G116000 2.82 0.8704
AT3G14470 NB-ARC domain-containing disea... Potri.004G197900 4.89 0.8290
AT3G44530 HIRA homolog of histone chaperone H... Potri.004G184900 5.00 0.8468
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Potri.011G094100 6.92 0.8602
AT1G63700 EMB71, MAPKKK4,... YODA, MAP KINASE KINASE KINASE... Potri.001G102900 7.93 0.8356
AT1G24706 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.... Potri.019G054600 8.83 0.8456
AT3G56320 PAP/OAS1 substrate-binding dom... Potri.019G056800 9.53 0.8276
AT3G14470 NB-ARC domain-containing disea... Potri.004G197800 12.00 0.8195
AT1G55325 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, R... Potri.003G220800 12.40 0.8420

Potri.018G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.