Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26280 701 / 0 CID7 CTC-interacting domain 7 (.1) AT5G25540 57 / 4e-09 CID6 CTC-interacting domain 6 (.1) AT5G11440 46 / 1e-05 CID5, IPD1 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218900 [exp] 1020 / 0 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1) Potri.009G046300 [exp] 73 / 3e-13 AT5G58720 418 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Potri.006G246600 [exp] 48 / 5e-06 AT5G11440 103 / 2e-28 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009796 [exp] 775 / 0 AT2G26280 701 / 0.0 CTC-interacting domain 7 (.1) Lus10038081 [exp] 761 / 0 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1) Lus10040668 [exp] 58 / 2e-08 AT5G58720 416 / 1e-140 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10004296 [exp] 54 / 2e-07 AT5G23520 267 / 8e-86 smr (Small MutS Related) domain-containing protein (.1) Lus10019219 [exp] 51 / 2e-06 AT5G23520 303 / 8e-100 smr (Small MutS Related) domain-containing protein (.1) Lus10018236 [exp] 51 / 2e-06 AT5G58720 417 / 2e-141 smr (Small MutS Related) domain-containing protein (.1), smr (Small MutS Related) domain-containing protein (.2), smr (Small MutS Related) domain-containing protein (.3) Lus10021960 [exp] 44 / 7e-05 AT5G25540 98 / 3e-26 CTC-interacting domain 6 (.1) Lus10041253 [exp] 42 / 0.0004 AT5G25540 95 / 6e-25 CTC-interacting domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01713 [poplar] [flax] Smr Smr domain PF08590 [poplar] [flax] DUF1771 Domain of unknown function (DUF1771)
Representative CDS sequence Show only first row Show all	>Potri.018G047700.10 pacid=42802124 polypeptide=Potri.018G047700.10.p locus=Potri.018G047700 ID=Potri.018G047700.10.v4.1 annot-version=v4.1 ATGAACTTATCCAAGAAAGGTTCTTTAACCAACGATACAAAGCTTAGTCTTCCAAACAAGGCAACAACCTTGAACCCAAATGCTGCAGAGTTTGTCCCCT TTTCCCTCAGATCATCCTCTTCTCCATCTGGAAGCACCTCAAACACGACAGATGCTGCAACAAAACTCGCTACTTCTGGAACTGTAGGGAAATCAGTTCT TGATCGATCAGAATCATCTGTTTCTAATGCTTCTGATGACGAGGCCCATCAATTCTGGCGCCACCAGCTCCCAGATGATATCACCCCTGATTTTAAGGTC ATGAATGAAGATGAGTCTCAGGGACTTGGAGGGCTCTCTTTAGCAGGCTTGTCTTTACATGACAGTAGTGAAGTGCCAAGATTCCATGCCTCCTCCAGAA GCGGATATGTCTTGACTGAGCAGCAGGAACCGTCACCACATCATATCAATGGTAGCAGCTTCAGTGAAAATATGAGATATGCTGTTGCTTCATACGGGGA AGATCCTACTTCAGCAAGTTTTTTGAACTTGCCAACTAAGCCCTGGGACAAGCAAATTGCTAACAGTGATCAACTTCTTAGCAATGGTAGGGAGGTACAT CCATACAATGGAAATTCTAGACATGGGTTCAGAAGTGAAATATTAGGTGAGCATGCAATAGTGGATGATACTGAAATAAACCCTTTGGAGTTTTTGGCTT CACAATTCCCTGGGTTTGCTGCTGAAAGCCTGGCGGAAGTTTATTTTGCAAATGCCTGTGACTTAAATCTCACTATTGAGATGCTCACTCAGTTAGAGCT CCAAGTTGATGGTGGTTTCAATCAGACTACGAACTCGAAGACTGTGTCAGCTCCCACCAATCTCAGTGCACTGGACTTTCCAGCACTTACGGTGCCAGAT AATCAGAATGGTCCTTCAAAATATGCTGGAGATGATCTTCAGCAAGCTGGCATTCCTTATCGATCTTCTAACAAAGACAACATGCTTGTATTCAAGTCTG GTGCTTCCTTTTCATCTAGAGGTGCTGTGGATTTTGCATCAGCTGTCAGGAAATTGGCTTCTCAAGATTCTAGTATGTGGAACCATGACAGAAATGGTTC TGCTGATTCAACTGTTGGCTCAAGCAGAAGTTCCCATGTTTTGGCTAGTGCTTATAGTGGTGGTCATGGGAGAGGCATTTATGCAGATAGGTCGCAAAGT CGTGGGTCAGGTCAAGCAGCTCCTGTCTGGCTTGAAACTGGAGAAGCAGTGGCAAGCATGTATTCTGAGATGCGGGAAGAAGCTCGTGATCATGCACGTA TAAGGAATGCATACCTTGAACAGGCACGTCAAGCTTACCTCATTGGAAATAAGGCTCTGGCGAAGGAATTGAGTGCCAAAGGACAACTGCACAATATGCA TATGAAGGAAGCTCATGGAAAAGCTCAAGAATCCATTTATCGCCAGAGGAATCCAGCTAGTCTAGAGATGCAGGGAACTGGGAGAGGGCATGAACGAATG ATAGACCTTCATGGGCTGCATGTAACTGAAGCCATTCATGTGCTAAAGCACGAGTTGAGTATTCTGAGGAGCACAGCACGGGCAGCAGATCAGCGTTTGC AGGTTTATATATGTGTTGGAACAGGCCATCACACTAGGGGTGCTCGCACTCCTGCAAGACTTCCAGTTGCTGTACAGCGATACCTGCTCGAAGAAGAGGG CCTCGACTACACTGAACCACAGCCAGGGCTGCTTCGAGTAGTGATGTATTGA
AA sequence Show only first row Show all	>Potri.018G047700.10 pacid=42802124 polypeptide=Potri.018G047700.10.p locus=Potri.018G047700 ID=Potri.018G047700.10.v4.1 annot-version=v4.1 MNLSKKGSLTNDTKLSLPNKATTLNPNAAEFVPFSLRSSSSPSGSTSNTTDAATKLATSGTVGKSVLDRSESSVSNASDDEAHQFWRHQLPDDITPDFKV MNEDESQGLGGLSLAGLSLHDSSEVPRFHASSRSGYVLTEQQEPSPHHINGSSFSENMRYAVASYGEDPTSASFLNLPTKPWDKQIANSDQLLSNGREVH PYNGNSRHGFRSEILGEHAIVDDTEINPLEFLASQFPGFAAESLAEVYFANACDLNLTIEMLTQLELQVDGGFNQTTNSKTVSAPTNLSALDFPALTVPD NQNGPSKYAGDDLQQAGIPYRSSNKDNMLVFKSGASFSSRGAVDFASAVRKLASQDSSMWNHDRNGSADSTVGSSRSSHVLASAYSGGHGRGIYADRSQS RGSGQAAPVWLETGEAVASMYSEMREEARDHARIRNAYLEQARQAYLIGNKALAKELSAKGQLHNMHMKEAHGKAQESIYRQRNPASLEMQGTGRGHERM IDLHGLHVTEAIHVLKHELSILRSTARAADQRLQVYICVGTGHHTRGARTPARLPVAVQRYLLEEEGLDYTEPQPGLLRVVMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.018G047700 [exp]	0	1
AT3G13670			Protein kinase family protein ...		Potri.003G215700 [exp]	1.73	0.7778
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.006G212400 [exp]	4.24	0.7617
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.004G193500 [exp]	4.47	0.7453
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Potri.004G075700 [exp]	5.19	0.7273
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	6.48	0.7576
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	13.49	0.7098
AT3G50690			Leucine-rich repeat (LRR) fami...		Potri.005G124700 [exp]	13.74	0.7345
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.005G113400 [exp]	14.49	0.7383
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	15.19	0.7206	PFT1.1
					Potri.005G081700 [exp]	19.59	0.6839

Compare expression of checked genes

Potri.018G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.