Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21930 1193 / 0 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 578 / 0 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT1G63440 355 / 9e-107 HMA5 heavy metal atpase 5 (.1) AT5G44790 341 / 1e-101 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G30110 219 / 5e-59 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 203 / 2e-53 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G37270 166 / 3e-42 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT4G30120 144 / 4e-36 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT1G80660 109 / 5e-24 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G07560 105 / 8e-23 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G024000 [exp] 594 / 0 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 575 / 0 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.006G220201 [exp] 439 / 1e-147 AT5G21930 369 / 1e-121 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.001G019100 [exp] 353 / 2e-106 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G075700 [exp] 346 / 2e-103 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G158900 [exp] 341 / 2e-101 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G125600 [exp] 334 / 3e-99 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 331 / 3e-98 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 322 / 4e-95 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038070 [exp] 1182 / 0 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10023777 [exp] 588 / 0 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10009789 [exp] 478 / 4e-160 AT5G21930 447 / 1e-149 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10031273 [exp] 348 / 3e-104 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 330 / 1e-97 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10008309 [exp] 316 / 1e-92 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10038364 [exp] 311 / 6e-91 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 262 / 5e-74 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10006955 [exp] 217 / 4e-58 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 216 / 8e-58 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00403 [poplar] [flax] HMA Heavy-metal-associated domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G047800.3 pacid=42800351 polypeptide=Potri.018G047800.3.p locus=Potri.018G047800 ID=Potri.018G047800.3.v4.1 annot-version=v4.1 ATGTTTTCAATTCTGTCACCCGCCGCCACCGGCAAGAAAGATACAATCATCCAGCGTGTCAAAACACTATTCGTCCACGTTTACCAATTTAATGTTCTCC TCTTCCTCTCGATCACATCCAATCCATTGACGATCATCAAATCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGCCTTCTCTGAGGTTTCTCTCTC TAAAACTTTGATTTCTATCAAAATGATTAACAATTTACTTCTCGTGGTCTCTCCGAAACCGAAGCTCTGCTTCGCTCGAACTTCAAAATTCAACTTTGAC AGCGTTCACTTCAATGCTAACCTCTCTAAACGCCGCCGTTTGGCTCTCCGGCCTCGTGCGTTCCCTAAGTTCACCCTCTCAAGTTCTCTCCAAACCGAAA CTGACCTTGAAAACGCTGCGTTTCAAGCTCCGAAGAACAACAATTCGCCGATTCTCCTTGATGTGACCGGAATGATGTGCGGCGCGTGTGTTTCGCGCGT CAAATCGATACTCTCCGCAGACGAGAGAGTTGAGTCCGCCGTGGTCAACATGTTGACCGAAACGGCGGCGGTGAAGCTGAAACCGGAGGCGTTGTTGGAG GGAGAAGTGTCGGCGAGTATTGGTGAGAGTTTGGCGAAGAGATTGAGCGAGTGTGGATTTGAAGCGAAGAAGAGGGTATCGGGAAATGGAGTGGCAGAGA ATGTAAAAAAGTGGAAAGATATGGTTAAAAAGAAAGAGGAGCTGATCGTTAAGAGTAGGAATCGGGTGGTTTTTGCTTGGACATTGGTTGCTTTGTGTTG TGGATCTCATGCTTCTCATATCTTGCACTCTCTTGGGATTCACGTTGGTCATGGTTCGGTCTTGGAGGTGCTGCATAATTCGTATGTGAAGGGAGGCTTA GCTTTGGGATCTCTCTTGGGACCAGGAAGAGACTTGCTTGTTGATGGTCTAAGGGCATTCAAGAAGGGATCACCGAATATGAATTCTCTTGTGGGATTTG GATCCATTGCTGCATTTGTCATCAGTGCGATCTCGCTTCTCAACCCTGCGCTTGAATGGGATGCATCTTTCTTTGATGAACCGGTCATGCTTCTTGGTTT TGTGCTTCTAGGACGTTCTCTTGAAGAAAAGGCTAGGATCAGGGCATCTAGTGATATGAATGAACTTCTTGCACTCATGTCCACTCAGTCACGACTTGTA ATTACTCCATCGGATAGCAATTCCCCTACGGAAAATGTTCTTTGTTCTGATGCTATTTGCACTGAAGTCCCCACTGATGATGTCCGAGTTGGAGACACAT TGTTAGTTCTGCCTGGAGAAACTATTCCTGTAGATGGGAGAGTTCTTGCAGGAAGAAGTGTTGTGGACGAATCCATGCTTACTGGGGAATCACTGCCTGT ATTTAAGGAAGAAGGGCTCAAAGTCTCAGCTGGAACAATAAACTGGGATGGTCCTTTAAGGGTAGAGGCATTGTCTACTGGCTCCAACTCAACAATATCT AGGATCATTCGTATGGTTGAGGATGCTCAAGGCAGCGAAGCGCCTATACAAAGGCTTGCAGACTCAATAGCTGGACCTTTTGTTTATAGTGTAATGACTG TATCTGCAGCAACTTTTGCCTTTTGGTATTACATTGGTTCACATGTTTTCCCTGATGTTTTGCTCAATGATATTGCTGGACCAGATGGAGATCCTTTGCT GTTGAGCTTGAAACTTTCTGTGGATGTCTTGGTAGTTTCCTGCCCATGTGCACTGGGACTTGCCACACCAACTGCAATCCTAGTTGGAACATCGCTTGGA GCAAAGCAAGGACTTCTAATAAGAGGAGGAGATGTATTGGAACGCTTAGCAAGCATTAGTTATGTTGCTCTTGATAAGACAGGAACCCTCACTGAAGGAA AGCCTGCTGTTTCTGCTGTGGCCTCAATCTCTTACGAAGAATCAGAAATTCTTCAAATGGCATTTGCTGTAGAGAGAACAGCATTGCATCCAATTGCAAA AGCTATTGTAAACAAAGCAGAATCATTAAAATTGACTATCCCGGAAACAAGAGGACAATTGACGGAACCAGGTTTTGGAACCTTAGCTGAAGTAGATGGA CGTTTGGTTGCAGTAGGTTCCTTGGATTGGGTTAACGAAAGATTCCAGAGAAGAACAAAACTGTCTGATCTAAAGGATCTGGAAACTAAAGTGACGTATC AGTCCTCAGAAGGGATGCCATCATCAAACTATTCAAAAACAGTTGTCTATGTTGGACGAGAAGGGGAAGGCATCATTGGTGCTATTGCAATATCTGACTG TTTGCGCCATGATGCTGAATCTACTATAAGTAGGCTCCAGCAGAAGGGTATCAACACGGTCCTCTTATCAGGAGACAGGGAAGAGGCAGTTGCAACCATA GCAAACAGAGTTGGTATAGAAAGTGAATTTATCAATGCATCCTTGACTCCACAGAAAAAATCTGAAGTAATATCAAGTCTTCAAGCAGCAGGGCATCGTG TTGCAATGGTAGGTGATGGAATAAATGATGCACCTTCTTTGGCTCTTGCTGATGTTGGAATTGCCATCCAGAATGAAGCTCAAGAAAATGCTGCATCTGA TGTCGCATCCATTATACTTCTTGGCAACAGACTTGCACAAGTTGTAGATGCCCTGGATCTTTCACGAGCAACAATGGCCAAAGTGTACCAAAATTTATCA TGGGCAATAGCGTATAATGTTGTTGCTATTCCTATTGCGGCCGGAGTACTGCTTCCGCAATACGATTTTGCCATGACTCCTTCACTTTCAGGTGGACTGA TGGCCTTGAGCTCGATATTTGTTGTCTCCAACTCATTGCTTCTACAGCTCCATAGATCTGAAACTGGGAGGAACAGAGAGAGAAGTACGTGA
AA sequence Show only first row Show all	>Potri.018G047800.3 pacid=42800351 polypeptide=Potri.018G047800.3.p locus=Potri.018G047800 ID=Potri.018G047800.3.v4.1 annot-version=v4.1 MFSILSPAATGKKDTIIQRVKTLFVHVYQFNVLLFLSITSNPLTIIKSISLSLSLSLSHAFSEVSLSKTLISIKMINNLLLVVSPKPKLCFARTSKFNFD SVHFNANLSKRRRLALRPRAFPKFTLSSSLQTETDLENAAFQAPKNNNSPILLDVTGMMCGACVSRVKSILSADERVESAVVNMLTETAAVKLKPEALLE GEVSASIGESLAKRLSECGFEAKKRVSGNGVAENVKKWKDMVKKKEELIVKSRNRVVFAWTLVALCCGSHASHILHSLGIHVGHGSVLEVLHNSYVKGGL ALGSLLGPGRDLLVDGLRAFKKGSPNMNSLVGFGSIAAFVISAISLLNPALEWDASFFDEPVMLLGFVLLGRSLEEKARIRASSDMNELLALMSTQSRLV ITPSDSNSPTENVLCSDAICTEVPTDDVRVGDTLLVLPGETIPVDGRVLAGRSVVDESMLTGESLPVFKEEGLKVSAGTINWDGPLRVEALSTGSNSTIS RIIRMVEDAQGSEAPIQRLADSIAGPFVYSVMTVSAATFAFWYYIGSHVFPDVLLNDIAGPDGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLG AKQGLLIRGGDVLERLASISYVALDKTGTLTEGKPAVSAVASISYEESEILQMAFAVERTALHPIAKAIVNKAESLKLTIPETRGQLTEPGFGTLAEVDG RLVAVGSLDWVNERFQRRTKLSDLKDLETKVTYQSSEGMPSSNYSKTVVYVGREGEGIIGAIAISDCLRHDAESTISRLQQKGINTVLLSGDREEAVATI ANRVGIESEFINASLTPQKKSEVISSLQAAGHRVAMVGDGINDAPSLALADVGIAIQNEAQENAASDVASIILLGNRLAQVVDALDLSRATMAKVYQNLS WAIAYNVVAIPIAAGVLLPQYDFAMTPSLSGGLMALSSIFVVSNSLLLQLHRSETGRNRERST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	0	1
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.003G067600 [exp]	4.24	0.7815	Pt-LOX3.2
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	4.47	0.8095	Pt-APK1.2
AT3G22250			UDP-Glycosyltransferase superf...		Potri.016G019400 [exp]	7.21	0.7762
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167900 [exp]	11.83	0.7738
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.005G207300 [exp]	14.49	0.7178
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.008G078800 [exp]	14.49	0.7398
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	14.79	0.7790
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Potri.015G126900 [exp]	21.44	0.7554	Pt-ATTPPA.2
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.008G085500 [exp]	23.36	0.7654
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Potri.001G222600 [exp]	25.23	0.7127	Pt-CIPK3.1

Compare expression of checked genes

Potri.018G047800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.