Plant FIBer expression Database

Potri.018G048500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
AT3G63170 135 / 2e-36 Chalcone-flavanone isomerase family protein (.1)
AT1G53520 45 / 5e-05 Chalcone-flavanone isomerase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G219600
[exp]
721 / 0 AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3)
Potri.002G052200
[exp]
132 / 4e-35 AT3G63170 290 / 2e-98 Chalcone-flavanone isomerase family protein (.1)
Potri.011G101800
[exp]
50 / 9e-07 AT1G53520 282 / 4e-95 Chalcone-flavanone isomerase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042592
[exp]
126 / 4e-33 AT3G63170 298 / 2e-101 Chalcone-flavanone isomerase family protein (.1)
Lus10022046
[exp]
125 / 7e-33 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1)
Lus10022045
[exp]
119 / 1e-30 AT3G63170 283 / 7e-96 Chalcone-flavanone isomerase family protein (.1)
Lus10042591
[exp]
118 / 4e-30 AT3G63170 274 / 5e-92 Chalcone-flavanone isomerase family protein (.1)
Lus10032083
[exp]
81 / 7e-17 AT3G63170 140 / 3e-40 Chalcone-flavanone isomerase family protein (.1)
Lus10014620
[exp]
64 / 2e-11 AT3G63170 112 / 3e-30 Chalcone-flavanone isomerase family protein (.1)
Lus10026174
[exp]
47 / 2e-05 AT1G53520 259 / 3e-84 Chalcone-flavanone isomerase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0560 Chalcone-like PF02431 Chalcone Chalcone-flavanone isomerase
Representative CDS sequence
>Potri.018G048500.1 pacid=42801835 polypeptide=Potri.018G048500.1.p locus=Potri.018G048500 ID=Potri.018G048500.1.v4.1 annot-version=v4.1
ATGAGGAACAATTGGTTCTTTTTCATGGATTTAGATGGAGAATCTCAATACATGTTTCCCTTAGAGCCCCTATTATCACAAGGCTTTGGGGCTAATCTAT
TTTCTCAGCTTAGTTCATTTGTTGATAATCCTTTGCACCAATCGAGATTCCTACATGTCCCTGGAACCATGGCTTTTCAAGAAGCTTTGAACGGCATGTC
GAAGCTTGCTGGTGGTTTGATTTTTTGGTTCACTAGTGCATCTAGTTCAAATTTGAGTCGCCAAATATCAGGCAATCAGATTTCTCCCACACCAGGAAGC
TGTAGATCTTCAGCACAAGTTAAGAACTCTACTTCTACTAGATGTGATCTTGCTGGTTTAGGCTTCGGTTTTGTATCAAAAGTAGAGTCTTCACCTCCTG
TGGTTTCTAGTACGATCTCAAGTTTTGTGATGAGGCTCCTACTCGGGGAAGCTGAAAGACTTCAGTCATTCCCTGTCCTCTCATTAGCTGCTTCTCTGGT
ACCACCATTTGACAACTTAGCTTCAAAGGTACTAGCTATTCCTTTGGAGAATGGTGATGTACAAGTGCATGCATCCATAGATCAAAGGCCTTGTGAAGTT
GAGCATTGTGGATGTCCAGGCCTATCATTTTCTGATTTAAACTGGACAAGACATGCCGTTGAGCCCAGAACTGGCATTGAGTTCCCAATGTTTTTGGACA
ACATCGTAGCTGGACAGGAAAGATCTAGATTAACTTCAGAGGTTCTTGTTGGTACTGGATCCAGAACTATGACAATAATCAGAATAAAGTCTCTGAAGAT
TTATGCTTTTGGTGTCTATGTTCATACTAATTCTGTCTGTGAAAAACTGGGCCCAAAGTATGCTTCCATTCCAATGGGTGAATTAATTAAACACCGTGAC
TTTTATGAGGACCTTCTCAGGGAAGACATCTCCATGACTGTTCGGCTTGTGATTAACTGCAATGGGATAAAAATCAATACTGTTAGGGATGCTTTTGAGA
AATCACTTCGAAACCGTTTATTGAAGACAAACCCAGACACTGATTACCATTGCCTGACTACATTTGGTTCATTCTTCACAAAAGATATTCCACTACCTGC
GGGAACAACAGTTGATTTTCGACGGACAGCTGATGGGCAACTAATAACTGAAATTGGAGGTAACCAAATTGGAGTGGTTTGTAGCAAGGATTTATGTAGA
GCTTTCTTTGACATTTACATAGGTGATATTCCTGTCTCAGAGCAAACGAAGAAAGAGATTGGCAAGAATGTTGCCAGCATTATCGGGAAGTGCTAA
AA sequence
>Potri.018G048500.1 pacid=42801835 polypeptide=Potri.018G048500.1.p locus=Potri.018G048500 ID=Potri.018G048500.1.v4.1 annot-version=v4.1
MRNNWFFFMDLDGESQYMFPLEPLLSQGFGANLFSQLSSFVDNPLHQSRFLHVPGTMAFQEALNGMSKLAGGLIFWFTSASSSNLSRQISGNQISPTPGS
CRSSAQVKNSTSTRCDLAGLGFGFVSKVESSPPVVSSTISSFVMRLLLGEAERLQSFPVLSLAASLVPPFDNLASKVLAIPLENGDVQVHASIDQRPCEV
EHCGCPGLSFSDLNWTRHAVEPRTGIEFPMFLDNIVAGQERSRLTSEVLVGTGSRTMTIIRIKSLKIYAFGVYVHTNSVCEKLGPKYASIPMGELIKHRD
FYEDLLREDISMTVRLVINCNGIKINTVRDAFEKSLRNRLLKTNPDTDYHCLTTFGSFFTKDIPLPAGTTVDFRRTADGQLITEIGGNQIGVVCSKDLCR
AFFDIYIGDIPVSEQTKKEIGKNVASIIGKC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26310 Chalcone-flavanone isomerase f... Potri.018G048500
[exp]
0 1
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.001G117200
[exp]
1.41 0.7516
AT2G38420 Pentatricopeptide repeat (PPR)... Potri.006G106400
[exp]
4.47 0.7178
AT1G05790 lipase class 3 family protein ... Potri.014G150800
[exp]
5.29 0.7232
AT4G22760 Tetratricopeptide repeat (TPR)... Potri.003G116100
[exp]
16.06 0.7172
AT4G21300 Tetratricopeptide repeat (TPR)... Potri.011G156800
[exp]
18.00 0.7190
AT2G20000 CDC27b, HBT HOBBIT, CDC27 family protein ... Potri.006G164000
[exp]
18.81 0.7205
AT2G32940 AGO6 ARGONAUTE 6, Argonaute family ... Potri.014G159400
[exp]
25.21 0.6818 AGO902
AT5G13690 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCL... Potri.012G075932
[exp]
27.56 0.6635
AT5G01660 unknown protein Potri.016G127600
[exp]
30.41 0.6548
AT3G06540 AthREP Rab escort protein (.1) Potri.005G028900
[exp]
34.49 0.6492

Potri.018G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.