Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GPA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26300 657 / 0 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT1G31930 174 / 2e-47 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 147 / 5e-38 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 110 / 9e-26 XLG2 extra-large GTP-binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219500 [exp] 734 / 0 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.001G135300 [exp] 188 / 2e-52 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 181 / 7e-50 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 160 / 9e-43 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 157 / 1e-41 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 147 / 5e-38 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 140 / 9e-36 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 140 / 1e-35 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 134 / 9e-34 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003115 [exp] 652 / 0 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10004784 [exp] 649 / 0 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10010421 [exp] 159 / 3e-42 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 155 / 6e-41 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10021012 [exp] 152 / 3e-40 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 153 / 6e-40 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 151 / 2e-39 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 150 / 2e-39 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00503 [poplar] [flax] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.018G048600.2 pacid=42801196 polypeptide=Potri.018G048600.2.p locus=Potri.018G048600 ID=Potri.018G048600.2.v4.1 annot-version=v4.1 ATGCTGTCTATCACAACACAAAATATGGGGTTACTCTGCAGTAAACGGCATCGATACAATGAAGCAGATACTGAAGAGAATGCACAGGCTGCAGAAATTG AAAGGCGAATTGAACAAGAAACCAAAGTTGAACAGCATATTCAAAAAATTTTGCTTCTTGGTGCTGGAGACTCTGGGAAGTCAACGATTTTCAAGCAGAT AAAACTTTTGTTTCAAAGTGGTTTTGACGAGGCAGAGCTCAAGAGCTATATCTCAGTCATCCATGCGAACGTCTATCAGACAATAAAAGTATTGCACGAT GGATCAAAAGAATTGGCTCAAAATGAAACAGATTCCTTGAAGTATGTTATATCCAATGAAAATAAGGATATTGGACAGAAATTGTCGGAAATTGGAGGCA GGTTGGATCATCCAAGTCTTACCAAAGAACTTGCCCAGGAGATTGAAACTCTATGGAGAGATGCTGCAATTCAGGAAACATATGCCCGTGGCAATGAGCT CCAAGTTCCAGATTGTACCCCTTATTTCATGGAGAATTTGCAAAGATTGTCTGATGCAAATTATATTCCAACTAAGGACGATGTTCTTTATGCAAGAGTT CGTACAACAGGTGTTGTAGAGATCCAATTCAGCCCTGTTGGTGAGAACAAGAAAAGTGGGGAGGTATATAGACTTTTTGATGTCGGTGGGCAGAGAAATG AGAGGCGGAAATGGATTCATCTATTTGAAGGTGTTACAGCTGTAATTTTTTGTGCTGCAATTAGCGATAGCCACTGCAGTATCCATTGCATGCCACATTT CCAAAAGCAAACAAACTTTGCTGGGATTATCTGGCCTATATCTTCCACAAGGACCTCTCAGAATGGCTTCAGTTTTTTATTTGAATATGGAAAATCTTGT TACGGGTATGATCAAACACTATTTGAGGATGAAAACAAGAATCGAATGATTGGGACAAAGGAGCTTTTTGAGTGGGTCCTGAAGCAACCATGCTTTGAGA AGACATCCTTCATGCTGTTTCTAAACAAGTTTGATATATTTGAAAAGAAAGTTCTGAAAGTACCTTTGAATGTATGCGAGTGGTTCAAGGACTACCAGCC AGTTTTGACAGGAAAACTAGAGATTGAGCATGCATACGAGTTTGTAAAGAAGAAGTTTGAGGAGTTGTATTTCCAAAGCACAACCCCTGATCGCGTTGAC CGGGTATTTAAAATATATAGAACCACAGCACTTGATCAGAAGCTTGTGAAAAAAACTTTCAAGCTTGTAGATGAGACTTTAAGACGCAGAAATCTCTTTG AAGCTGGTTTATTGTGA
AA sequence Show only first row Show all	>Potri.018G048600.2 pacid=42801196 polypeptide=Potri.018G048600.2.p locus=Potri.018G048600 ID=Potri.018G048600.2.v4.1 annot-version=v4.1 MLSITTQNMGLLCSKRHRYNEADTEENAQAAEIERRIEQETKVEQHIQKILLLGAGDSGKSTIFKQIKLLFQSGFDEAELKSYISVIHANVYQTIKVLHD GSKELAQNETDSLKYVISNENKDIGQKLSEIGGRLDHPSLTKELAQEIETLWRDAAIQETYARGNELQVPDCTPYFMENLQRLSDANYIPTKDDVLYARV RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISDSHCSIHCMPHFQKQTNFAGIIWPISSTRTSQNGFSFLFEYGKSC YGYDQTLFEDENKNRMIGTKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVLTGKLEIEHAYEFVKKKFEELYFQSTTPDRVD RVFKIYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.018G048600 [exp]	0	1	Pt-GPA1.1
AT1G56230			Protein of unknown function (D...		Potri.013G013000 [exp]	4.12	0.8686
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.001G402400 [exp]	6.00	0.8646	Pt-MLO11.1
AT3G60260			ELMO/CED-12 family protein (.1...		Potri.014G049800 [exp]	14.69	0.8040
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	16.30	0.8181
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Potri.015G073900 [exp]	19.97	0.8474
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Potri.008G116600 [exp]	21.40	0.7699
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	22.71	0.8620
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	23.32	0.8446
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	23.66	0.8176
AT4G36440			unknown protein		Potri.007G019400 [exp]	25.21	0.8423

Compare expression of checked genes

Potri.018G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.