Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33210 1204 / 0 SLOMO SLOW MOTION, F-box family protein (.1) AT4G15475 80 / 4e-15 F-box/RNI-like superfamily protein (.1) AT2G25490 79 / 6e-15 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 74 / 5e-13 EBF2 EIN3-binding F box protein 2 (.1) AT5G23340 66 / 4e-11 RNI-like superfamily protein (.1) AT1G21410 64 / 1e-10 SKP2A F-box/RNI-like superfamily protein (.1) AT5G01720 65 / 2e-10 RNI-like superfamily protein (.1) AT1G77000 62 / 1e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G27920 54 / 6e-07 F-box family protein (.1) AT3G58530 51 / 3e-06 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G220900 [exp] 1620 / 0 AT4G33210 1183 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.006G254100 [exp] 92 / 7e-19 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 87 / 4e-17 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 86 / 9e-17 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 82 / 1e-15 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.016G128400 [exp] 70 / 8e-12 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 68 / 2e-11 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 63 / 4e-10 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.017G056400 [exp] 61 / 2e-09 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026472 [exp] 1303 / 0 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1) Lus10038067 [exp] 1278 / 0 AT4G33210 1215 / 0.0 SLOW MOTION, F-box family protein (.1) Lus10012764 [exp] 94 / 5e-19 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 79 / 1e-14 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012214 [exp] 79 / 2e-14 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10001264 [exp] 76 / 1e-13 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10002165 [exp] 72 / 2e-12 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 70 / 7e-12 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 68 / 1e-11 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 68 / 2e-11 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.018G048700.5 pacid=42800555 polypeptide=Potri.018G048700.5.p locus=Potri.018G048700 ID=Potri.018G048700.5.v4.1 annot-version=v4.1 ATGAAGATTTGGTGTTTCTCGTGCTTCATTTTCGGTAAAAAAGAAGTAGTAGAATATAAACCCATGAGAGAGGGCATTTCAGAAAATGAAGGCAACACTG AGGGTAATTTTGGAAATAACGAAGAGGAGGATACTGAGGCCGTTGCATTGACAGATATCCGCCGAGACCGTAATGCTCGGGAGTCGTTGAGGTGGATTGA GGAAATGATTAGAGCGATGCAACGTACACGTGGCGGCGGAGGCAGCGGTGCGGCTACTTGGGGAGAGGTGGGGCCGGGTTTCGAGGTGGAGGCTCAATTT GTGGCTCCTTCTCTTGCTTTGAGGAGCTCTGCTTTTCGCGCCTCATGGCTGGCACGGGGAGAAAGTAGTGGTAGTAGTTCTGCAGTGGCAGAGGCGGAGG GTAGTGGTAAAGAGAAGTGTGATCGCGATGCCCATAATAAAAGGGCTAAAGTTTACTCCTGTTCTAATGACAGTCATTATGCTGCGGTAATGTCTTCAGA TGTTGGCGATTCTACTTCATCGGCAGATAGAGACCTTGGTTTAACTCAGAGCTCTTCAATTTCGTCTAATAATGAGATTTGTTATCATAACTTCATGTGG AATAACAACAGCGATGAGAATCCCTTTGATTCTAGTGGTGGGAGAGATGGTGGTGATGATAGTGTCATTTCCAATTCAGAAGACTTAGATGTTAGGATGG ATCTTACAGATGACTTGTTGCATATGGTTTTCTCTTTCTTGGACCACATTAATCTATGTCGGGCAGCAATGGTTTGTAGGCAGTGGCAAGCTGCTAGTGC TCATGAAGACTTCTGGAGGTGTTTGGATTTTGAGAACCGAAACATATCGGTAGAACAATTTGAGGACATGTCTCGACGATACCCGAATGCCACTGAAGTG AATATTTATGGTGCTCCTTCTATTCAACTGCTTGTTATGAAAGCAGTCTCTTCTTTAAGAAATCTTGAGTCTTTAACCTTGGGAAAAGGACAGCTAGGGG ATCCTTTTTTCCATGCCTTGGGAGATTGTAGCATGTTAAAGAATTTGAATGTCAATGATGCTACTCTGGGTAATGGTATTCAGGAGATACCAATAAACCA TGATAGACTGTGTCATCTTCAACTAACAAAATGCCGTGTGATGAGGATATCTGTCAGGTGTCCACAACTTGAAACTTTATCTTTGAAGCGCAGCAACATG GCACAGGCTGTGCTGAATTGTCCTCTCCTGCGTCTCCTTGACATAGGCTCTTGCCACAAGCTTACAGATGCAGCAATTCGTTCGGCAGCAATTTCATGCC CTCAATTAGCATCTTTAGACATGTCGAATTGTTCTTGTGTGAGTGATGAGACACTACGTGAAATATCCCACACTTGTGCTAATCTTCACACTCTTAATGC TTCTTATTGTCCAAACATATCACTTGAGTCTGTTAGGCTGCCAATGTTGACAATTCTCAAGCTTCATAGTTGTGAGGGCATCACTTCAGCTTCAATGTCT GCAATTGCACATAGTTCCTTGCTGGAGGTTTTGGAGCTTGACAATTGCAGTCTTTTGACTTCTGTGTCCTTGGATCTTCCTCGCTTGCAAAACATAAGAT TAGTACATTGTCGAAAATTTGCTGATCTGAACTTACGAAGTATCATGCTATCATCTATAATGGTGTCTAATTGCCCAGCCCTTCATCGAATCAATATCAC TTCCAATTCACTTCAAAAATTAGCATTGCAGAAGCAGGAGAACCTAGCAACATTAGCATTACAGTGCCAAAGTTTGCAAGAAATGGACCTCACAGATTGT GAATCTTTGACTAATTCTATTTGTGATGTTTTTAGTGATGGTGGTGGATGCCCAAAGCTGAAATCATTGGTTCTTGATAATTGCGAGAGTTTGACTGCTG TGCGATTCCGCAGCACTTCTTTAGTCAGTCTTTCCCTAGTTGGTTGCCATGCTATTACTGCTCTCGATCTGGCGTGCCCTTCTCTTGAGCTTGTTTGTTT GGATGGCTGTGATCATCTTGAGAAAGCATCATTTTGTCCAGTTGCTCTACGGTTACTCAATTTAGGAATATGTCCCAAACTGAACATGCTTAGCATTGAA GCACCATTCATGGTGTCCCTTGAGTTAAAAGGATGTGGTGTATTATCTGAAGCAACTATTAATTGTCCCCTCTTGACATCTCTGGACGCTTCATTTTGCA GCCAACTCAAGGATGGCTGCTTGTCTGCAACCACTGCATCCTGCCCACTGATTGGATCATTGATTTTGATGTCTTGCCCTTCTGTTGGCTCTGATGGACT ATTTTCTTTGGGGCGACTTCCACATTTGACTCTGCTTGATTTGTCATACACTTTTTTGATGAATCTGGAGCCAGTGTTCGACTCTTGTTTGCAATTGAAG GTTCTAAAATTACAAGCATGCAAATACCTTACTGACACGTCATTAGAGCCTCTCTACAAGGATGGTGCTCTTCCAGCACTTCAGGAGTTGGACTTATCTT ATGGCACCCTATGTCAATCTGCAATTGAAGAGCTTCTTGCTTGTTGTAGACACCTCACTCATTTGAGCTTGAATGGCTGTGCAAACATGCATGACCTGAA TTGGGGATGCAGTGGTGGTCAGATTTATGAGTTCCCAAGCAAATTTAGCTCAGCTGCCCTGTTTTCAGATGAGAATCTTCCTGTGTCAACTGAGCAGCCA AATCGCTTATTGCAGAACCTCAACTGTGTTGGTTGTCCGAATATTAGGAAAGTTGCCATTCCACCAGTGGCCCGTTGTTTGCTTCTTTCTTCTCTAAATC TTTCTCTGTCCTCCAATTTGAAGGAAGTTGATGTTGTTTGTTTTAATTTGTGCTATCTCAATTTGAGCAATTGTTGCTCCTTGGAAATATTGAAGCTTGA GTGTCCAAGGTTGACTAGTCTTTTTCTTCAGTCTTGCAATATTGATGAAGAAACTGTTGAGGCTGCCATATCTCAATGTGGCATGCTGGAGACTCTAGAT GTACGTTTTTGTCCGAAGATATGCTCAATAAGCATGGGCCAATTACGCGCAGCATGCCCGAGTTTGAAGCGTATCTTTAGCAGCCTGTGA
AA sequence Show only first row Show all	>Potri.018G048700.5 pacid=42800555 polypeptide=Potri.018G048700.5.p locus=Potri.018G048700 ID=Potri.018G048700.5.v4.1 annot-version=v4.1 MKIWCFSCFIFGKKEVVEYKPMREGISENEGNTEGNFGNNEEEDTEAVALTDIRRDRNARESLRWIEEMIRAMQRTRGGGGSGAATWGEVGPGFEVEAQF VAPSLALRSSAFRASWLARGESSGSSSAVAEAEGSGKEKCDRDAHNKRAKVYSCSNDSHYAAVMSSDVGDSTSSADRDLGLTQSSSISSNNEICYHNFMW NNNSDENPFDSSGGRDGGDDSVISNSEDLDVRMDLTDDLLHMVFSFLDHINLCRAAMVCRQWQAASAHEDFWRCLDFENRNISVEQFEDMSRRYPNATEV NIYGAPSIQLLVMKAVSSLRNLESLTLGKGQLGDPFFHALGDCSMLKNLNVNDATLGNGIQEIPINHDRLCHLQLTKCRVMRISVRCPQLETLSLKRSNM AQAVLNCPLLRLLDIGSCHKLTDAAIRSAAISCPQLASLDMSNCSCVSDETLREISHTCANLHTLNASYCPNISLESVRLPMLTILKLHSCEGITSASMS AIAHSSLLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLRSIMLSSIMVSNCPALHRINITSNSLQKLALQKQENLATLALQCQSLQEMDLTDC ESLTNSICDVFSDGGGCPKLKSLVLDNCESLTAVRFRSTSLVSLSLVGCHAITALDLACPSLELVCLDGCDHLEKASFCPVALRLLNLGICPKLNMLSIE APFMVSLELKGCGVLSEATINCPLLTSLDASFCSQLKDGCLSATTASCPLIGSLILMSCPSVGSDGLFSLGRLPHLTLLDLSYTFLMNLEPVFDSCLQLK VLKLQACKYLTDTSLEPLYKDGALPALQELDLSYGTLCQSAIEELLACCRHLTHLSLNGCANMHDLNWGCSGGQIYEFPSKFSSAALFSDENLPVSTEQP NRLLQNLNCVGCPNIRKVAIPPVARCLLLSSLNLSLSSNLKEVDVVCFNLCYLNLSNCCSLEILKLECPRLTSLFLQSCNIDEETVEAAISQCGMLETLD VRFCPKICSISMGQLRAACPSLKRIFSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	0	1
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	1.00	0.8848
AT3G12590			unknown protein		Potri.008G052700 [exp]	6.63	0.8213
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	7.14	0.8200
AT2G32000			DNA topoisomerase, type IA, co...		Potri.014G148800 [exp]	8.94	0.7539
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	9.38	0.8062
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	10.39	0.8060
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.015G049500 [exp]	10.81	0.7547	SCD1.3
AT5G22450			unknown protein		Potri.004G203500 [exp]	13.63	0.8110
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	15.49	0.7646
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.010G005800 [exp]	15.81	0.7053

Compare expression of checked genes

Potri.018G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.