Plant FIBer expression Database

Potri.018G049800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57280 356 / 4e-124 RID2 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G338700
[exp]
436 / 6e-156 AT5G57280 370 / 1e-129 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028960
[exp]
367 / 3e-128 AT5G57280 444 / 4e-159 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10007484
[exp]
366 / 3e-128 AT5G57280 436 / 9e-156 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10020005
[exp]
258 / 7e-86 AT5G57280 327 / 2e-113 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10015533
[exp]
40 / 0.0003 AT5G57280 46 / 1e-06 root initiation defective 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
CL0063 PF12589 WBS_methylT Methyltransferase involved in Williams-Beuren syndrome
Representative CDS sequence
>Potri.018G049800.3 pacid=42801795 polypeptide=Potri.018G049800.3.p locus=Potri.018G049800 ID=Potri.018G049800.3.v4.1 annot-version=v4.1
ATGTCGAATCGACCAGAGCTACTAGCTCCACCTGAGATTTTTTATGATGATTCAGAGGCTCGTAAATACACTTCCTCTTCTCGAATTATCGATATTCAGG
CTAGGCTATCAGAAAGAGCGTTGGAGCTTCTTGCTTTGTCTGTTGATGGAATCCCTAGATTACTCCTCGATATCGGCTGTGGATCAGGACTTAGTGGGGA
GACATTAACTGAAAATGGTCATCAATGGATCGGCTTAGATGTTTCACAATCAATGCTTAATATTGCTTTGGAGCGGGAGGTTGAGGGTGATCTTTTACTG
GGTGATATGGGTCAGGGCCTAGCACTTCGACCTGGAATTATTGATGGTGCCATCAGTATTTCAGCTGTTCAGTGGCTATGCAATGCAGATAAGTCCTCCC
ATGAACCAAGACTAAGATTGAAGGCTTTCTTTGGATCATTATATAGATGTTTGGCAAGAGGAGCAAGAGCAGTGTTCCAAGTGTATCCTGAAAACATAGC
CCAGCGTGAATTAATTTTGAGATCTGCAATGCATGCTGGATTTGCTGGTGGTGTTGTTATTGATTACCCACACAGTGCCAAGAGTAGAAAAGAATACCTC
GTGCTTACTTGTGGAGTACCATCTATAAGCACTGCTGTTCCGAGGGGGAAAGGTGAAGATGGAGAAAGCTGCTCTGAAGATGAAAGCAGTGAAGAAAATC
AGACGGTTTGCATTTCAGACAGGAACAGACCTAAGAAAAAACAGAAAATAACCAGGAAAGGGAAGGGCAAGGATTGGATATTTAAAAAGAAAGAGCAACT
GAGACGAAAAGGAAACGCAGTGCCTCCCGACACAAGATACACTGGTCGAAAACGGAAGGCTCGATTTTGA
AA sequence
>Potri.018G049800.3 pacid=42801795 polypeptide=Potri.018G049800.3.p locus=Potri.018G049800 ID=Potri.018G049800.3.v4.1 annot-version=v4.1
MSNRPELLAPPEIFYDDSEARKYTSSSRIIDIQARLSERALELLALSVDGIPRLLLDIGCGSGLSGETLTENGHQWIGLDVSQSMLNIALEREVEGDLLL
GDMGQGLALRPGIIDGAISISAVQWLCNADKSSHEPRLRLKAFFGSLYRCLARGARAVFQVYPENIAQRELILRSAMHAGFAGGVVIDYPHSAKSRKEYL
VLTCGVPSISTAVPRGKGEDGESCSEDESSEENQTVCISDRNRPKKKQKITRKGKGKDWIFKKKEQLRRKGNAVPPDTRYTGRKRKARF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57280 RID2 root initiation defective 2, S... Potri.018G049800
[exp]
0 1
AT3G49000 RNA polymerase III subunit RPC... Potri.015G144900
[exp]
3.16 0.8675
AT5G18920 Cox19-like CHCH family protein... Potri.008G198500
[exp]
5.29 0.8346
AT2G36230 HISN3, APG10 ALBINO AND PALE GREEN 10, Aldo... Potri.004G090500
[exp]
6.00 0.8768
AT1G48140 DPMS3 dolichol phosphate mannose syn... Potri.002G245800
[exp]
6.00 0.8638
AT4G15790 unknown protein Potri.010G024600
[exp]
11.48 0.8420
AT4G31810 ATP-dependent caseinolytic (Cl... Potri.018G018800
[exp]
12.40 0.8254
AT5G27400 S-adenosyl-L-methionine-depend... Potri.005G039000
[exp]
13.03 0.7935
AT3G07660 Kinase-related protein of unkn... Potri.011G079800
[exp]
13.41 0.7933
AT1G58210 EMB1674 EMBRYO DEFECTIVE 1674, kinase ... Potri.017G036100
[exp]
13.96 0.8487
AT5G18920 Cox19-like CHCH family protein... Potri.010G028000
[exp]
18.16 0.8052

Potri.018G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.