Plant FIBer expression Database

Potri.018G049900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54200 122 / 7e-31 unknown protein
AT3G13980 119 / 7e-30 unknown protein
AT5G12050 86 / 3e-18 unknown protein
AT3G42800 81 / 1e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G222700
[exp]
608 / 0 AT1G54200 114 / 4e-28 unknown protein
Potri.001G170500
[exp]
304 / 7e-99 AT1G54200 167 / 2e-47 unknown protein
Potri.003G063400
[exp]
302 / 3e-98 AT1G54200 173 / 7e-50 unknown protein
Potri.006G144700
[exp]
135 / 1e-35 AT3G13980 130 / 2e-34 unknown protein
Potri.018G065000
[exp]
99 / 3e-22 AT3G42800 139 / 1e-37 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025011
[exp]
199 / 9e-59 AT3G13980 115 / 1e-28 unknown protein
Lus10026463
[exp]
196 / 7e-58 AT1G54200 107 / 7e-26 unknown protein
Lus10037659
[exp]
130 / 5e-34 AT3G13980 193 / 9e-59 unknown protein
Lus10008457
[exp]
128 / 6e-33 AT3G13980 151 / 1e-42 unknown protein
Lus10015641
[exp]
84 / 2e-17 AT3G13980 176 / 3e-52 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G049900.1 pacid=42801251 polypeptide=Potri.018G049900.1.p locus=Potri.018G049900 ID=Potri.018G049900.1.v4.1 annot-version=v4.1
ATGCATAGGTGGGAGAAAACAATGGAGGAAAGATACAACAAGCATGATATGAAGAACCCATCTTTCTCTTCATCTCTTCTGGATGAAATCTACCGTTCTT
TTGATGATGGTGAACCAAAACATGAAGAGTTGAAATTCTATCGAGAAACAATGCCGAGGAAACAAAACAAAGGTACTAGTGGGATTAAGATTGAACGAGA
AGAAGGGATGTCAGCTCTTCAACGAGCTTGTTTGATCGAAAAATGGATGGAACAGAAGGTGAGTCAAAAGCTCATCACTCAACAGAGGAGGCAAAAACTG
ATAGAATTCGAGAGAAAATCACAGCTTGATCATGATCTTGACCAAGATGTCCTGTTTTTTAGCTCCACTTCAACCTCTTCAGATTCTAGCTCTGGTGGGT
TCTCATCTTCTGATACAGAATCTATGTATGGTGGGTTCTCAAGGGCTTCTTCTTTCAATCCACCAAAGCCTATGCCAGTCAGGACAAGCGCGTCGGCTCG
GTCAGGAAAAACAGAGAGGACTCTGTTTTATGAACAGAGGGAAGCGCATATGTTCGATGATTACCACTACAATTCTGCTTCAGAACAGACACCAAGGTTC
GAAGAGAGCTTAATCAAGCCCGAATCAAGAGCCTTAAAGACTTACCGCAATCTAAAGAAGGTGAAACAGCCAATTTCACCGGGTAGCAAGCTCGCAAATT
TCCTTAATTCCCTCTTCACCACAGGGAACACAAAGAAATCAAAGAATTCACCTACCAATGGAAACTTTGATGAAGAAAGGGAACTTAAATCAGGGCAAGC
ATCAACCTGCTCTTCTGCTTCATCGTTCTCAAGATCCTGTTTGAGCAAGCATTCGCCATCGACAAGGGAGAAATTACGCAATGGGGTTAAAAGGAGTGTC
AGGTTTTACCCTGTGAGTGTAATTGTTGATGAAGATTGCAGGCCAGTCGGACACAAATCATTATATGATGTGGAAGAATCAAGTCTAAAGTCTGTTTCTC
TGTCAACAGCATGGAAAATTGGGAAATCACCATCAAGAAAAATAGATGATGAGCTTAAGTACCAAGTAGTGGAGAAGAGTAGGAGAATTGAGGAAGTGGC
GAGAGTGTTCTTGAAAGATTATCATCAAAACAAGAAGAAAAATGACGTTATTAAGATTGGTGCTGGCGGAAAGTACAATGATCGTTTCGAGGATGAAGAT
GAAGATGAGGACGAGGATGATGATGCTGCAAGTTATTCGAGTTCGGATTTATTCGAGCTTGATCATCTTGCAGTAATCGGAAAAGATCGTAGGTATTCTG
AAGAGCTCCCTGTGTATGAAACTACTCATCTCGATACAAATCGTGCCATTGCTAATGGCTTGATGGTGTAG
AA sequence
>Potri.018G049900.1 pacid=42801251 polypeptide=Potri.018G049900.1.p locus=Potri.018G049900 ID=Potri.018G049900.1.v4.1 annot-version=v4.1
MHRWEKTMEERYNKHDMKNPSFSSSLLDEIYRSFDDGEPKHEELKFYRETMPRKQNKGTSGIKIEREEGMSALQRACLIEKWMEQKVSQKLITQQRRQKL
IEFERKSQLDHDLDQDVLFFSSTSTSSDSSSGGFSSSDTESMYGGFSRASSFNPPKPMPVRTSASARSGKTERTLFYEQREAHMFDDYHYNSASEQTPRF
EESLIKPESRALKTYRNLKKVKQPISPGSKLANFLNSLFTTGNTKKSKNSPTNGNFDEERELKSGQASTCSSASSFSRSCLSKHSPSTREKLRNGVKRSV
RFYPVSVIVDEDCRPVGHKSLYDVEESSLKSVSLSTAWKIGKSPSRKIDDELKYQVVEKSRRIEEVARVFLKDYHQNKKKNDVIKIGAGGKYNDRFEDED
EDEDEDDDAASYSSSDLFELDHLAVIGKDRRYSEELPVYETTHLDTNRAIANGLMV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G54200 unknown protein Potri.018G049900
[exp]
0 1
Potri.006G138400
[exp]
1.73 0.7696
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.005G058501
[exp]
5.09 0.7537
Potri.003G065900
[exp]
7.07 0.7339
AT3G02630 Plant stearoyl-acyl-carrier-pr... Potri.010G179400
[exp]
10.95 0.7298
AT4G36360 BGAL3 beta-galactosidase 3 (.1.2) Potri.005G232600
[exp]
11.95 0.7294 GAL1.7
AT3G21100 RNA-binding (RRM/RBD/RNP motif... Potri.001G255400
[exp]
13.19 0.7531
AT1G16060 AP2_ERF ADAP ARIA-interacting double AP2 do... Potri.003G185300
[exp]
13.74 0.7391
AT1G20160 ATSBT5.2 Subtilisin-like serine endopep... Potri.003G189200
[exp]
14.69 0.6806
AT1G03440 Leucine-rich repeat (LRR) fami... Potri.014G136100
[exp]
14.69 0.7496
AT1G74680 Exostosin family protein (.1) Potri.002G210000
[exp]
20.85 0.7256

Potri.018G049900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.