Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12070 134 / 6e-33 unknown protein AT5G41170 82 / 5e-16 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 79 / 1e-14 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12620 77 / 4e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 76 / 6e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16710 75 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 75 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 75 / 1e-13 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12300 74 / 2e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 73 / 5e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223300 [exp] 350 / 9e-111 AT1G05670 208 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.001G017000 [exp] 112 / 9e-26 AT4G12070 543 / 0.0 unknown protein Potri.003G207600 [exp] 107 / 3e-24 AT4G12070 546 / 0.0 unknown protein Potri.005G038400 [exp] 84 / 2e-16 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 76 / 3e-14 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 76 / 9e-14 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123600 [exp] 76 / 1e-13 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 74 / 2e-13 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G205600 [exp] 74 / 3e-13 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026465 [exp] 230 / 7e-66 AT1G05670 197 / 6e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10025013 [exp] 195 / 5e-55 AT1G05670 161 / 1e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10031257 [exp] 120 / 2e-28 AT4G12070 548 / 0.0 unknown protein Lus10031828 [exp] 104 / 3e-23 AT4G12070 416 / 7e-142 unknown protein Lus10021989 [exp] 73 / 1e-12 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 71 / 2e-12 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025533 [exp] 71 / 3e-12 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036238 [exp] 71 / 3e-12 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003433 [exp] 71 / 3e-12 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10038377 [exp] 71 / 4e-12 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.018G050100.2 pacid=42801820 polypeptide=Potri.018G050100.2.p locus=Potri.018G050100 ID=Potri.018G050100.2.v4.1 annot-version=v4.1 ATGGCTGATACTTTGGTTTGTGTTAGACGAGTGAAGCAAGAAGCATCCGAAGAGTGGGATGAGAGCATGCCATTGCCAGGAGACATAATTGAAGGGTTTG CTGAGAATAACGCAGATGAGTTATTTGTGCCAGCTAAAGCCAAGTCTGATCTGAGTTCGCAGCTTGGAAAGATTAGCCCGCAGACTGAGACAGTATGGTT GAAGGTTAGAAGAGGTGAGAGGACGCTGAAGCTCCGTGCCAGAGTAATGCCAGATAAGAGCGCAGTGCTACAGAGAAGATTCACCATTAAAGCAGCCAAT GATGATAGGCATGTTGCAGTTTTAGGAGACTTGACCTTGGAACAATGCACAGAGCTACAAGAAATGAGCAGGAAAGTAGTGAATATGGATTCCTGGGCAT TTAGCAAGCGGGGAGTGAAGTATGACTGGAAGATGAAAGTTGATAACTATCTACCGGACCAGCGATCTAGTGTTGTTAGTTCTATTCTGTTCATGCCTCT ACAAGGTGAACACAGCATTGAAGCCACTACAGGCAGGTGCATGGCCTGGTTTTCAGCAGCAGTTTCTTCAGGAGCTCCTATTGTGTTTGTCAATATCCAA ACAGAACAGACTCTAAATGTGAAAAGCAATAATACACCTGTTCAGATATTGCAAGGGATAAGACTATGGTTTCTACCTGGAGTTGCAGAAATTCTGCTTG AAATGATACCAGAACCTGGAGAAACTCGTTTTGGAATGGACATCAAACGAATTGATGAGGGCTTTATTTGTGTCTGCTCAGTGACAAAAGGTTCAGCAGC TGAACGTGCTGGCCTTAGCGACCTATTTGAAGAGGCAAATAAAGTCGGCCACCTACTTGTGATTTCTCGATTAGAAGGAAAGAGCCTAATGCCTTCAAGT GTCTGCTCGATGGGGCTTATACACTGTTGTGATCAAAATGAAGTTAAGGACACTCTCATTTCTTCCATTGACGAAATGGATTCAATTCAAATCCACCTCA TGGCCTGGCCTAACCAGACTCATTCTAGCAACACTAAAGCAAATGGTGTTGCACACCTTCAACCTCCAAAGGCTCTACTGCTCTCATCATCCTCTGAAGC TACTGATACAACCTTCTCTAGAAATTCAGCCCTGTGGCTCACCTACAAATCTCCTCCTCCCCCATTTCACAACAAGCACAAATCTCCACCACCACCACCT CACAAGTACAAATCTCCACCACCTCCACATCATAAATGCAAGTATAGTCCTCCACCTCCTGTATATACCTACAGATCACCACCTCCACCAACCCCTATGC ACCACAAGTCACCACCACCATCACCTCATATGTTCAAGTCTCCACCTCCTCCTCCTTACAGATATATATCACCGCCACCACCACCGCCACATCCTCCTTG TCATGCTTACAAATACTTGTCACCCCCACCTCCACCAAGCTACAAAAAACAACCACCTAATATCCTTACAAAGCCCTCTACCCAAACAACTACTTTCATA ATAGCCATCATTGACCTTCTCCTCTCTCACTCACACTTTACCATTGCCAAAAACCTCCTTGAAAAACATGGCATGTTTTCTGATCTTATAAGATACAAGT TTAGTGCTTGCTTTTTATTGGAATGCTATTTGGGTGTGAGAGTGAAAGCCAGTCAGATTAATTTAGCAAAGACATTTTTTGATCAAATTGTGAATGATGC TTTTGTAAAGCCTGATGCTTTAACGTATACATCAATGATTAGAGGGTTTTTCAAAGTGGGTATGATTGAGAATTCTAGGAAAATGTTTGATGAAATGATT TGTGAGCCTAATTTTGATAACTTATATACCTCGATTAATGGATATTGTAAGAAAGGTGGTATGGAAAATGCAAGGATATTTTTGCGTAGAATGATGGAGA GCACGGACTGTTTGCCGGATACGGTTACTTTGATTGATGGTTATTGTAAGAAAGGGGGATTCAATGAGGCAACGAAGTGGGATGGATGTGTAGATGAGGC CAGGAAGTTGTTGATGAAGATGAGTTTGAATAGGGTGAGAGAAAATGTTGCTAATCATTTGAGTATTTTGAAGGGCCTTTCCATTATGGAGAAAAAAGAA ATTAAACTTGATGCAAAAGAGCCTGGGGTTGTGATTAATGATTCTAGTTGCCTTCCAACACGGGGTTGCCTTCCAAATTTTATGTCATATAGCACGGTGA TATGCTGTCTTTGTAAGTCCCAAGTTAGTGGTTGCTGTGAAGATGGCGACAAGGAAATGGCAATGCTAATTTTCTATGAGTCAATTAACAGGAATCATGT CATTAATGTGCAGAACTTTTCGGCGTTTGTCAAAATGATGTGTGAAAAGAGAAAAATCTGTGGAAGATGCTCATTAGTTTATGTAGACAGTTACCAGAGG GTCCTAGATGTTCAATTGCAGAAACAGTCAGGGTTAGGATGA
AA sequence Show only first row Show all	>Potri.018G050100.2 pacid=42801820 polypeptide=Potri.018G050100.2.p locus=Potri.018G050100 ID=Potri.018G050100.2.v4.1 annot-version=v4.1 MADTLVCVRRVKQEASEEWDESMPLPGDIIEGFAENNADELFVPAKAKSDLSSQLGKISPQTETVWLKVRRGERTLKLRARVMPDKSAVLQRRFTIKAAN DDRHVAVLGDLTLEQCTELQEMSRKVVNMDSWAFSKRGVKYDWKMKVDNYLPDQRSSVVSSILFMPLQGEHSIEATTGRCMAWFSAAVSSGAPIVFVNIQ TEQTLNVKSNNTPVQILQGIRLWFLPGVAEILLEMIPEPGETRFGMDIKRIDEGFICVCSVTKGSAAERAGLSDLFEEANKVGHLLVISRLEGKSLMPSS VCSMGLIHCCDQNEVKDTLISSIDEMDSIQIHLMAWPNQTHSSNTKANGVAHLQPPKALLLSSSSEATDTTFSRNSALWLTYKSPPPPFHNKHKSPPPPP HKYKSPPPPHHKCKYSPPPPVYTYRSPPPPTPMHHKSPPPSPHMFKSPPPPPYRYISPPPPPPHPPCHAYKYLSPPPPPSYKKQPPNILTKPSTQTTTFI IAIIDLLLSHSHFTIAKNLLEKHGMFSDLIRYKFSACFLLECYLGVRVKASQINLAKTFFDQIVNDAFVKPDALTYTSMIRGFFKVGMIENSRKMFDEMI CEPNFDNLYTSINGYCKKGGMENARIFLRRMMESTDCLPDTVTLIDGYCKKGGFNEATKWDGCVDEARKLLMKMSLNRVRENVANHLSILKGLSIMEKKE IKLDAKEPGVVINDSSCLPTRGCLPNFMSYSTVICCLCKSQVSGCCEDGDKEMAMLIFYESINRNHVINVQNFSAFVKMMCEKRKICGRCSLVYVDSYQR VLDVQLQKQSGLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12070			unknown protein		Potri.018G050100 [exp]	0	1
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.001G248600 [exp]	1.73	0.8214
AT5G40610			NAD-dependent glycerol-3-phosp...		Potri.017G070900 [exp]	4.00	0.7692
AT5G26330			Cupredoxin superfamily protein...		Potri.009G136200 [exp]	13.30	0.6958
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G075900 [exp]	15.23	0.7300
					Potri.015G084300 [exp]	20.56	0.7265
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.003G091200 [exp]	25.39	0.7370
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.015G036100 [exp]	31.04	0.7338
					Potri.006G073450 [exp]	37.13	0.7304
AT4G23020			unknown protein		Potri.001G110900 [exp]	37.96	0.7236
					Potri.003G184250 [exp]	82.06	0.7046

Compare expression of checked genes

Potri.018G050100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.