Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) AT5G26200 391 / 3e-136 Mitochondrial substrate carrier family protein (.1) AT5G15640 231 / 1e-73 Mitochondrial substrate carrier family protein (.1) AT1G34065 75 / 8e-15 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 71 / 4e-13 Mitochondrial substrate carrier family protein (.1) AT1G07030 68 / 1e-12 Mitochondrial substrate carrier family protein (.1) AT5G51050 63 / 9e-11 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G53940 62 / 1e-10 Mitochondrial substrate carrier family protein (.1) AT2G35800 62 / 2e-10 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G30160 60 / 8e-10 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223600 [exp] 594 / 0 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 225 / 2e-71 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 222 / 6e-70 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 208 / 8e-65 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 83 / 9e-18 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 83 / 3e-17 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 67 / 2e-12 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G085900 [exp] 67 / 2e-12 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.010G121500 [exp] 66 / 1e-11 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025015 [exp] 424 / 5e-149 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 423 / 2e-148 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 421 / 1e-147 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 223 / 3e-70 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 220 / 1e-67 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 215 / 5e-67 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 186 / 1e-56 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10038063 [exp] 145 / 3e-43 AT1G72820 108 / 7e-30 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 72 / 9e-14 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 67 / 5e-12 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.018G050300.1 pacid=42800878 polypeptide=Potri.018G050300.1.p locus=Potri.018G050300 ID=Potri.018G050300.1.v4.1 annot-version=v4.1 ATGAGTTTGAGTGCTGCCGAGGATAATTCGGCATCAGAGATTCATCTACCAGCTGATATAGATTGGCATATGCTTGACAAGTCGAAGTTTTTCTTTCTTG GGGCAGCATTATTTTCAGGTGTATCAGCTGCTCTCTACCCTGTTGTTGTTTTAAAGACTAGGCAACAGGTTTTGCCCACGCAAATCTCGTCCCTCAAATT GTCATTGTCAATTATGAATCATGAAGGTGTGAGAGGATTCTATAGGGGTTTTGGTACTTCTTTGATGGGTACAATCCCAGCTCGTGCACTTTACATGACG GCGCTTGAGGTTACTAAGAGTAATGTTGGGACTGCAACTGTTAGGTTAGGGTTTTCAGATACTACAGCAACAGCTATTGCTAATGCTGCTGCTGGGTTGA GTTCTGCCATGGCTGCGCAGGTAGTTTGGACCCCAATTGATGTTGTGAGCCAAAGACTCATGGTACAAGATTGTAATGGTAGCAGCATCAAGAGTAGCAA GAATATGATCCCCAGTTCGAGTTCGTGTAGGTATATGAATGGTATTGATGCATTTAGGAAGATTTTGAATGCGGATGGTCCAAGAGGGTTGTATAGAGGA TTTGGGATATCAATATTGACTTATGCACCATCTAATGCAGTTTGGTGGGCATCTTACTCTGTGGCTCATAGGCTTGTGTGGGGTGGTATTGGTTGCTATG CCAGCAAGAAAGATGAGAATGCTGTAAATGGTGGTGGGGGTTGTGGTTATAGGCCGGGTTCAAAGGAAATGGTGGCAGTACAAGGGGTATGTGCAGCCAT GGCTAGTGGAGTTTCGGCTATGATTACTATGCCACTTGACACAATTAAGACACGCTTGCAGGTTTTGGATAGAGAGGAAAATGGAAGAACAAGGCCATTG ACAGTTATGCAAACAGTTAGGAACTTGGTGAAGGAAGGTGGTTTTGCAGCTTGTTATAGAGGATTGGGACCAAGGTGGGTTTCAATGTCAATGTCTGCAA CAACCATGATCACAACATACGAGTTTTTGAAACGTTTATCTACCAAGAACAGAGATAGCTTGACCTCATGA
AA sequence Show only first row Show all	>Potri.018G050300.1 pacid=42800878 polypeptide=Potri.018G050300.1.p locus=Potri.018G050300 ID=Potri.018G050300.1.v4.1 annot-version=v4.1 MSLSAAEDNSASEIHLPADIDWHMLDKSKFFFLGAALFSGVSAALYPVVVLKTRQQVLPTQISSLKLSLSIMNHEGVRGFYRGFGTSLMGTIPARALYMT ALEVTKSNVGTATVRLGFSDTTATAIANAAAGLSSAMAAQVVWTPIDVVSQRLMVQDCNGSSIKSSKNMIPSSSSCRYMNGIDAFRKILNADGPRGLYRG FGISILTYAPSNAVWWASYSVAHRLVWGGIGCYASKKDENAVNGGGGCGYRPGSKEMVAVQGVCAAMASGVSAMITMPLDTIKTRLQVLDREENGRTRPL TVMQTVRNLVKEGGFAACYRGLGPRWVSMSMSATTMITTYEFLKRLSTKNRDSLTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72820			Mitochondrial substrate carrie...		Potri.018G050300 [exp]	0	1

Compare expression of checked genes

Potri.018G050300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.