Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35460 591 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145600 [exp] 651 / 0 AT5G35460 536 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017161 [exp] 599 / 0 AT5G35460 610 / 0.0 unknown protein Lus10021569 [exp] 563 / 0 AT5G35460 575 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10998 [poplar] [flax] DUF2838 Protein of unknown function (DUF2838)
Representative CDS sequence Show only first row Show all	>Potri.018G051100.2 pacid=42801066 polypeptide=Potri.018G051100.2.p locus=Potri.018G051100 ID=Potri.018G051100.2.v4.1 annot-version=v4.1 ATGTCAAACAACGAAGAGCTTGTGGAGGAAATAATCACAACAAATGGGGATTCGTTCGAAAAGGTGAAACAGAGGCTGAAGGACCGATCTAAGAAAATGG CTCAAACAAAGGAGATGCTGTCAAAACAAGCGAACCAAACCAAAGAGATCTTGTCTAAACAGGCTGTTAAGATTGCCAAACAAGCCGAGGAACATGAAAG GTTTATTAATAAGGTGACTTATCTTCTTGGTGTTCTCGGGTTCGGGGGTTTTTGCTTCCTTTTGGGAGCGAGGCCACAAGATATCCCTTATGTGTATTGT TTCTTCTATTTCACATTTGTTCCTCTCCGGTGGATATACTACCGGTTCAAGAAATGGCACTATTATCTTCTGGATTTTTGCTATTATGCCAATACGATCT TCTTGGTCGACCTTCTTCTATATCCAAAGAACGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCTGAAGGACCATTGGCATGGGCATTGATTATTTGGCG TTGTAGCTTGGTTTTTAGTTCTGCTGACAAACTTGTTAGTGTCCTAATACATCTTCTACCTGGGTTAGTTTTCTTTACTATTCGGTGGTGGAATCCTGCA ACCTTCGAAGCCATGCATCCAAAAGAAACTTCCCGCAGAGTCTCATGGCCATATGGAGTGGAAGACAAATCCTACCTTTTGACATGGTTGTTCTGGGTGC CCTTGTTTGCTTATACCCTGTGGCAAGCTCTTTATTTCCTTATTGTCAATGTCCTACGTAGGCAGAGGCTATTAAGAGATCCTGAAGTCATGACTTCTTA CAGGGAGCTCTCAAAAAAGGCCCAGAAAGCAAATAATTTATGGTGGAAATTGAGTGGTTTGCTTGGGGACCAGAATCGCCTGCTGATGTACATTCTGTTG CAAGCAATATTTACTGTGGCAACCATGGCACTCACAGTTCCCATCTTTTTGTCCTATGAATTGCATGTGGTCTTCCAAATACTCAAGGTTTCAGCAGCTG CATGGAATGGAGGAAGCTTTCTGCTAGAGGTAATGCCTAAGCAGGTGATTCTCAAAGAGAAGAAGAAATCACAAATGCAGTCACCATCTACTCAGCACGA CCAATCATCAGTTTTGGTCGAAAATGCAATGAACACGGAAATCTCCACCGGGTGA
AA sequence Show only first row Show all	>Potri.018G051100.2 pacid=42801066 polypeptide=Potri.018G051100.2.p locus=Potri.018G051100 ID=Potri.018G051100.2.v4.1 annot-version=v4.1 MSNNEELVEEIITTNGDSFEKVKQRLKDRSKKMAQTKEMLSKQANQTKEILSKQAVKIAKQAEEHERFINKVTYLLGVLGFGGFCFLLGARPQDIPYVYC FFYFTFVPLRWIYYRFKKWHYYLLDFCYYANTIFLVDLLLYPKNEKLFMVCFSFAEGPLAWALIIWRCSLVFSSADKLVSVLIHLLPGLVFFTIRWWNPA TFEAMHPKETSRRVSWPYGVEDKSYLLTWLFWVPLFAYTLWQALYFLIVNVLRRQRLLRDPEVMTSYRELSKKAQKANNLWWKLSGLLGDQNRLLMYILL QAIFTVATMALTVPIFLSYELHVVFQILKVSAAAWNGGSFLLEVMPKQVILKEKKKSQMQSPSTQHDQSSVLVENAMNTEISTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35460			unknown protein		Potri.018G051100 [exp]	0	1
AT5G53310			myosin heavy chain-related (.1...		Potri.012G033100 [exp]	7.34	0.7804
AT1G72230			Cupredoxin superfamily protein...		Potri.002G101200 [exp]	21.58	0.7620
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	24.00	0.7508
AT2G27930			PLATZ transcription factor fam...		Potri.006G119400 [exp]	34.11	0.7468
AT4G15470			Bax inhibitor-1 family protein...		Potri.008G199200 [exp]	46.76	0.7285
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Potri.009G100700 [exp]	47.85	0.7274	ATHM3.1,PtrTrxm5
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G185900 [exp]	50.29	0.6810
AT4G16360			5'-AMP-activated protein kinas...		Potri.006G005800 [exp]	52.91	0.6804
AT1G01230			ORMDL family protein (.1)		Potri.014G101000 [exp]	53.85	0.6566
AT3G49880			glycosyl hydrolase family prot...		Potri.005G148800 [exp]	59.49	0.6749

Compare expression of checked genes

Potri.018G051100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.