Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26450 635 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 630 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 487 / 1e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 474 / 1e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 468 / 6e-158 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 451 / 1e-152 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 415 / 8e-139 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 412 / 2e-137 ATPME2 pectin methylesterase 2 (.1) AT3G14310 409 / 5e-136 ATPME3 pectin methylesterase 3 (.1) AT3G10710 406 / 3e-135 RHS12 root hair specific 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134700 [exp] 1042 / 0 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 538 / 0 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 522 / 0 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 497 / 7e-171 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 486 / 3e-166 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 484 / 5e-166 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 480 / 6e-164 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 477 / 7e-163 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 433 / 2e-145 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039927 [exp] 704 / 0 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 582 / 0 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 474 / 9e-162 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 471 / 1e-160 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 471 / 7e-160 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 461 / 8e-157 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 448 / 1e-151 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 441 / 1e-148 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 436 / 5e-147 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 416 / 4e-139 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.018G051200.1 pacid=42801254 polypeptide=Potri.018G051200.1.p locus=Potri.018G051200 ID=Potri.018G051200.1.v4.1 annot-version=v4.1 ATGGTTTTCCAAGATTTTGATCTCCTATCAGAGAGAAGAAGATTAGAAAGGCAACAAAAACTTAGAAAGAAAATTGCCATTGCTGCAGTTTCAGGTATTG CTTTCTTTGTTATAGTTGGTGCTGGAGTTCTCGCCCTTGTCTCTAATCACAAGAGCAGCCCAGGAAACAACGGAGGATCAGCTGTGCCTCAGCCTGTAGA ATCCGCAAAACCGATATCACGTGTCTCCAGGGTTATCAAAACGGTATGTAATGCTACCACTTACCAGGAGACATGCCAAAAAACCCTCGAGAAGGAAGTG GAAAAGGACCCTTCTTTGGCTCAACCCAAAAATCTTCTCAAGATAGCAATCAAAGCAGCCGATGAAGAGATGAAAAAGGTTTTAAAGAAAGCCTCATCCT TCAAATTCGACGACCCACGGGAGAAAGCTGCATTTGAAGATTGTCTAGAGCTCGTTGAGAATGCTAAAGAAGAATTGAAAGACTCTGTTGCCCATGTTGG TGATGATCTGGGAAAGCTTGCTAAAAATGCCCCGGACTTGAACAATTGGCTCAGTGCGGTCATGTCTTACCAAGAAACTTGCATTGATGGATTCCCTGAG GGAAAATTGAAATCTGATATGGAAAAGACATTTAAGGCATCTAAGGAGCTCACCAGCAATTCCCTTGCGATGGTTTCATCATTGACTTCATTCATGAAAA GTTTTCCCTTTCCAGCAGCACTTAACCGTCGGCTTCTGGCAAAGGAAGACAATTCACCCGCATTGAACAAGGATGACCTTCCTGGATGGATGAGTAATGA GGATCGCAGAATATTGAAGGGTGCTAGTAAAGACAAGCCACAACCAAATGTTACTGTGGCAAAAGATGGTAGTGGTGACTTCAAAACTATTTCCGAAGCA TTGGCGGCCATGCCAGCAAAATATGAAGGACGATATGTTATCTTTGTTAAACAAGGAATTTACGATGAGACCGTGACAGTGACAAAGAAGATGTCGAACA TCACTATCTACGGTGATGGATCACAAAAGACCATTGTGACAGGGAACAAAAATTTTGCTGACGGAGTTCAAACTTTCAGAACTGCCACTTTTGCGGTGTT AGGAGATGGATTTTTGTGCAAAGCTATGGGATTCAGAAACACAGCAGGTCCAGAGAAACATCAGGCTGTGGCTATCAGAGTCCAAGCTGATCGTGCAATA TTCCTGAACTGTCGTTTTGAGGGATACCAAGATACCTTGTATGCACAAACACACCGCCAATTCTACAGAAGCTGTGTCATTACCGGCACTGTTGATTTCA TCTTTGGAGATGCAACAGCCATCTTCCAGAACTGCCTTATTACTGTCCGTAAACCATTGGAAAACCAACAAAATCTCATTACGGCCCAGGGTAGGATTGA CGGACATGAAACTACAGGAATTGTTCTTCAAAATTGTCGCATCGAACCAGACAAGGACTTGGTTCCTGTAAAGACCAAGATCAGGAGTTACCTTGGAAGG CCCTGGAAAGAATTTTCAAGAACTATTATCATGGAATCAACGATTGGTGATTTTATTCACCCTGATGGATGGCTACCATGGCAAGGAGAGTTTGGACTCA AAACTCTGTATTATGCAGAGTACAACAATAAAGGAGCTGGTGCAAAGACAACTGCAAGGATCAAGTGGCCTGGCTATCATATCATTAATAATGAAGAGGC CATGAAATTTACTGCTGAGCCTTTCTATCAAGGGGATTGGATTAGTGCTACCGGCTCTCCTATTCACCTTGGCTTGTTTTAA
AA sequence Show only first row Show all	>Potri.018G051200.1 pacid=42801254 polypeptide=Potri.018G051200.1.p locus=Potri.018G051200 ID=Potri.018G051200.1.v4.1 annot-version=v4.1 MVFQDFDLLSERRRLERQQKLRKKIAIAAVSGIAFFVIVGAGVLALVSNHKSSPGNNGGSAVPQPVESAKPISRVSRVIKTVCNATTYQETCQKTLEKEV EKDPSLAQPKNLLKIAIKAADEEMKKVLKKASSFKFDDPREKAAFEDCLELVENAKEELKDSVAHVGDDLGKLAKNAPDLNNWLSAVMSYQETCIDGFPE GKLKSDMEKTFKASKELTSNSLAMVSSLTSFMKSFPFPAALNRRLLAKEDNSPALNKDDLPGWMSNEDRRILKGASKDKPQPNVTVAKDGSGDFKTISEA LAAMPAKYEGRYVIFVKQGIYDETVTVTKKMSNITIYGDGSQKTIVTGNKNFADGVQTFRTATFAVLGDGFLCKAMGFRNTAGPEKHQAVAIRVQADRAI FLNCRFEGYQDTLYAQTHRQFYRSCVITGTVDFIFGDATAIFQNCLITVRKPLENQQNLITAQGRIDGHETTGIVLQNCRIEPDKDLVPVKTKIRSYLGR PWKEFSRTIIMESTIGDFIHPDGWLPWQGEFGLKTLYYAEYNNKGAGAKTTARIKWPGYHIINNEEAMKFTAEPFYQGDWISATGSPIHLGLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	0	1
AT3G05610			Plant invertase/pectin methyle...		Potri.005G022900 [exp]	4.00	0.7460	PEF1.2
AT2G25185			Defensin-like (DEFL) family pr...		Potri.010G135666 [exp]	5.09	0.6748
					Potri.003G174850 [exp]	5.74	0.6430
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	6.92	0.8504	Pt-PNFT3.4
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.005G169000 [exp]	8.48	0.6908
AT3G17660		AGD15	ARF-GAP domain 15 (.1)		Potri.012G036900 [exp]	9.38	0.5928
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.009G083500 [exp]	9.38	0.6941
AT5G27470			seryl-tRNA synthetase / serine...		Potri.007G070501 [exp]	9.53	0.7729
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138400 [exp]	10.48	0.8025
AT5G10820			Major facilitator superfamily ...		Potri.018G017400 [exp]	12.24	0.7615

Compare expression of checked genes

Potri.018G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.