Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14310 708 / 0 ATPME3 pectin methylesterase 3 (.1) AT1G53830 701 / 0 ATPME2 pectin methylesterase 2 (.1) AT1G11580 441 / 2e-149 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 439 / 3e-148 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT4G02320 424 / 2e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 416 / 5e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 412 / 2e-138 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 412 / 2e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 405 / 3e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 401 / 3e-134 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072800 [exp] 780 / 0 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 741 / 0 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.003G002800 [exp] 607 / 0 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.003G002650 [exp] 606 / 0 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.001G162600 [exp] 569 / 0 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.001G162500 [exp] 566 / 0 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 563 / 0 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1) Potri.006G256600 [exp] 538 / 0 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 519 / 5e-180 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013344 [exp] 720 / 0 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 655 / 0 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10003933 [exp] 651 / 0 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10037458 [exp] 438 / 2e-149 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10038917 [exp] 436 / 9e-148 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 436 / 2e-147 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 423 / 1e-143 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 421 / 1e-140 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 416 / 2e-139 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 409 / 1e-137 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.018G051400.1 pacid=42801348 polypeptide=Potri.018G051400.1.p locus=Potri.018G051400 ID=Potri.018G051400.1.v4.1 annot-version=v4.1 ATGTCGAGCTCCGACAACCACAACACATTAAAGAACAAGAAAAGGCTCTTCTTGAGCCTCTTTTCATCTATCCTACTAGTCACTGCCATTGTTAGCATAG TTGCCGGTGTAACCTCAAGTAAGAATTCCACCGAATCTAACAATGACCACCAAGTAGCTCATACCATCCTGAAATCCTCATGCAGTAGTACATTGTACCC GCACCTGTGCTTCTCAGCATTATCAGCTGTACCAGATGCTACAAGCAAGATAAAGAGCAAAAAGGATGTAATAGATCTGTCGTTGAATCGAACCATGTCC GCTACCCGGCATAGCTATTTCAAAATTCAGAAACTCACTTCTACCCGAAGGAGCTTCACAGAGCGAGAAAACACTGCCCTCCATGATTGTCTAGTAATGT TAAATGAAACTCTAGATCAACTCTCCAAGGCTTATCAGGAACTCCAAGACTATCCATCTTTAAAAAAGTCCTTATCAGTACACGCTGATGACCTCAAGAT TCTACTCAGTGCTGCAATGACTAACCAAGAAACTTGCCTTGACGGTTTCTCTCATGACAAAGCTGATAAAAAGGTTCGTGAACTATTTATAGATGAAGAA ATGCATGTTTACCACATGAGTAGCATTGCATTGGCAATAATCAAGAACGTAACTGACACAGACATGGCTAAGGAGCAATCTCTATCATCAGGCAGGAAGC TTGAAGAGGAAAACGGAACAGAATGGCCTGAATGGTTGTCAGCAGGGGACCGGAGGCTGCTGCAAGCAACAACTGTGACTCCTAATGTTGTTGTGGCTGC GGATGGGAGTGGAAACTACCGGACAGTGTCTGAGGCAGTGGCGGCTGCACCAGAAAGAAGTAGTAGCAGATACATTATAAGGATTAAAGCAGGGGTTTAT AGAGAGAATGTGGATGTGCCAAGGAGTAAAACCAATATTATGTTCATGGGTGATGGAAGGACAACTACTATCATTACTGCTAGTAGGAATGTGGTTGATG GCAGCACCACATTCAACTCTGCAACTGTTGCTGCTGTTGGAGACGGATTCTTGGCCAGGGATATAACATTTCAAAATTCAGCAGGACCATCAAAACACCA AGCTGTTGCAATTCGTGTGGGATCAGACCTCTCAGCATTCTATAGGTGTGACATGATAGCATACCAGGATACCCTCTATGTACATTCACTTCGCCAATTC TATGTTAGTTGCATTATAATTGGCTCGGTAGATTTTATATTTGGTAACGCAGCAGTTGTATTCCAAGACTGTGACATACATGCCCGTCGCCCCAATCCAG GCCAAAAGAATATGGTTACAGCACAAGGCCGCAGTGACCCTAATGAAAACACAGGCATAGTGATCCAAAAATGCAGGATTGGTGCAACTCAAGATTTGCT AGCCGCAAAGAGCAGTTTCCGTTCATATTTAGGCAGACCATGGAAGTTGTACTCGAGGACTATCGTAATGCAAACAGAGATAAGTGATATTATAGACCCT GCAGGTTGGTTTGAGTGGGATGGTGACTTTGCTCTTGATACATTGGTCTATAGAGAGTATCAGAATACTGGACCAGGAGCTAACACTGCCAATAGGGTGA ATTGGAAAGGTTTCAAGGTGGTTACTAGTGCGATTGAGGTACAGCCCTTTATTGCTAGAAATTTCATTAGAGGGGCTAGTTGGTTGCCTTCCACTGGTTT TCCTTACTCTCTTGATCTTTAA
AA sequence Show only first row Show all	>Potri.018G051400.1 pacid=42801348 polypeptide=Potri.018G051400.1.p locus=Potri.018G051400 ID=Potri.018G051400.1.v4.1 annot-version=v4.1 MSSSDNHNTLKNKKRLFLSLFSSILLVTAIVSIVAGVTSSKNSTESNNDHQVAHTILKSSCSSTLYPHLCFSALSAVPDATSKIKSKKDVIDLSLNRTMS ATRHSYFKIQKLTSTRRSFTERENTALHDCLVMLNETLDQLSKAYQELQDYPSLKKSLSVHADDLKILLSAAMTNQETCLDGFSHDKADKKVRELFIDEE MHVYHMSSIALAIIKNVTDTDMAKEQSLSSGRKLEEENGTEWPEWLSAGDRRLLQATTVTPNVVVAADGSGNYRTVSEAVAAAPERSSSRYIIRIKAGVY RENVDVPRSKTNIMFMGDGRTTTIITASRNVVDGSTTFNSATVAAVGDGFLARDITFQNSAGPSKHQAVAIRVGSDLSAFYRCDMIAYQDTLYVHSLRQF YVSCIIIGSVDFIFGNAAVVFQDCDIHARRPNPGQKNMVTAQGRSDPNENTGIVIQKCRIGATQDLLAAKSSFRSYLGRPWKLYSRTIVMQTEISDIIDP AGWFEWDGDFALDTLVYREYQNTGPGANTANRVNWKGFKVVTSAIEVQPFIARNFIRGASWLPSTGFPYSLDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	0	1
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	1.00	0.9716
AT5G04370		NAMT1	S-adenosyl-L-methionine-depend...		Potri.019G022200 [exp]	3.16	0.9563
AT2G26490			Transducin/WD40 repeat-like su...		Potri.003G051100 [exp]	5.19	0.9313
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.004G155800 [exp]	5.47	0.9311
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.003G053000 [exp]	5.47	0.9357
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Potri.013G028100 [exp]	5.47	0.9097
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014401 [exp]	6.32	0.9177
AT4G31980			unknown protein		Potri.013G146300 [exp]	9.16	0.9333
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	9.38	0.9275
AT1G78170			unknown protein		Potri.002G096100 [exp]	9.53	0.9256

Compare expression of checked genes

Potri.018G051400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.