Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1) AT1G62150 67 / 1e-11 Mitochondrial transcription termination factor family protein (.1) AT1G21150 62 / 2e-10 Mitochondrial transcription termination factor family protein (.1) AT5G23930 58 / 6e-09 Mitochondrial transcription termination factor family protein (.1) AT4G02990 56 / 3e-08 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT5G54180 56 / 4e-08 PTAC15 plastid transcriptionally active 15 (.1) AT1G62110 53 / 3e-07 Mitochondrial transcription termination factor family protein (.1) AT5G55580 52 / 4e-07 Mitochondrial transcription termination factor family protein (.1) AT2G44020 51 / 1e-06 Mitochondrial transcription termination factor family protein (.1) AT1G61960 50 / 2e-06 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G012400 [exp] 67 / 1e-11 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 66 / 2e-11 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 65 / 3e-11 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 62 / 3e-10 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 60 / 2e-09 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 59 / 3e-09 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 56 / 3e-08 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 55 / 8e-08 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 55 / 8e-08 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021146 [exp] 546 / 0 AT1G74120 468 / 3e-163 Mitochondrial transcription termination factor family protein (.1) Lus10007988 [exp] 542 / 0 AT1G74120 475 / 6e-166 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 53 / 3e-07 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 50 / 1e-06 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10004534 [exp] 49 / 4e-06 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 49 / 4e-06 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 49 / 4e-06 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10037301 [exp] 49 / 7e-06 AT1G78930 508 / 4e-175 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 49 / 9e-06 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 47 / 3e-05 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.018G051600.5 pacid=42801238 polypeptide=Potri.018G051600.5.p locus=Potri.018G051600 ID=Potri.018G051600.5.v4.1 annot-version=v4.1 ATGGTTCGACCAACAGAAACTCTTCATCACCTCATTGCATCCGCACCAGCACCCTTTAAACCAAAACCCCGTTTCTTGTCCTCAAATCAATCCCTCTACA GGAAGCAAATTTCCCTCTCCACTCTCCTTCAGAGGTACGGTTTCCCTCCCTCTCAGCTACAAACTTTCCTTTCTCGAAATCATTTTCTTTTGAATTCCAA TTTACATGATACGGAGAAATCCCTTGGTATGCTCACATCATCCTTCAAGATTCCACATAAATCCGTTGTTTCTTTGATCATTGACTGTCCCGGGGTGTTG GACTTTGATTTCTTGAAGAGATGGGAATTTGGTTTGTCAAAATTTGCAGATTTGGGTGTTCCTCCATTGCTCATCAAAACTGTTTTGGAGCATTCTAAGA AATTCCAGATTGACCCAGATAGGTTTAATGAGACTTTGAAGGTTTTGAAGGGTTTAGGGTTTAGTGAAAGTACTACGAGGAGGGTTTTAGAGGGTTTTCC TGGAGTGATTGCTTTGAAGGAATGCGAAATACATAGGAGAATTCAATTCTTGATGGCAATTGGAATTCCTAGAGATGGAGTTGACCGCGTTTTCAATTCA TTTCCTGAGGTTTTAGGGTTTGGAATTGAAAATAGGCTAATGCCATTGCTCAATGAGTTTAAGGATTTGGGTTTTAGTGAAGAGTTGGTTAGGAAAGAGA TTATTAGAGAGCCTCGGATTCTCGGTATGGAAGTAGGTGAACTCTCGAGGTGTTTGGACTTGATTAGGTCTTTGAAATGTCGAGAACCGATCAAATTGAA GATTTTTAGTAAGGGAGCATTTAGAGCTGGGTTTGAAGTGAAACTTAGAGTCGACTGCTTATGCAAACATCGGTTGATTCGCAGAGAAGCTTTTAAGATA TTGTGGAAAGAGCCAAGGGTAATTTTATATGAAATAGATGACATTGAGAAGAAGATTGATTTTATAGTGAAAACAGTGGGATTGAATGTCGGTTGTTTGG TTGATGTTCCAGAGTATCTGGGTGTGAGTTTTGAGAAGCAGGTTGTTCCTCGATATAAGGTAATAGAGTATTTGCGTGCAAAAGGTGGACTTGGTAATGA GGTAGGATTGAAGGCCATGATCAAGCTAAGTAGGCTTAGATTCTATAATCTTTATGTTAAGCCATATCCAGAATGTGAAAAAATGTTTGGAAGGTTTTCA GGTGATGTTCAAGTTAAAAACCAACATCCGGCTGGATTATGGAAGCTTTTGAAACCCCAACAAAGGGATCCTGACTCGAAAGAAGATGTGAAGAACATGA AGTCTTTCATGGAAGGACTTGTTTAG
AA sequence Show only first row Show all	>Potri.018G051600.5 pacid=42801238 polypeptide=Potri.018G051600.5.p locus=Potri.018G051600 ID=Potri.018G051600.5.v4.1 annot-version=v4.1 MVRPTETLHHLIASAPAPFKPKPRFLSSNQSLYRKQISLSTLLQRYGFPPSQLQTFLSRNHFLLNSNLHDTEKSLGMLTSSFKIPHKSVVSLIIDCPGVL DFDFLKRWEFGLSKFADLGVPPLLIKTVLEHSKKFQIDPDRFNETLKVLKGLGFSESTTRRVLEGFPGVIALKECEIHRRIQFLMAIGIPRDGVDRVFNS FPEVLGFGIENRLMPLLNEFKDLGFSEELVRKEIIREPRILGMEVGELSRCLDLIRSLKCREPIKLKIFSKGAFRAGFEVKLRVDCLCKHRLIRREAFKI LWKEPRVILYEIDDIEKKIDFIVKTVGLNVGCLVDVPEYLGVSFEKQVVPRYKVIEYLRAKGGLGNEVGLKAMIKLSRLRFYNLYVKPYPECEKMFGRFS GDVQVKNQHPAGLWKLLKPQQRDPDSKEDVKNMKSFMEGLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	0	1
AT5G48385			FRIGIDA-like protein (.1)		Potri.015G110132 [exp]	1.41	0.9133
AT5G43920			transducin family protein / WD...		Potri.014G194100 [exp]	3.74	0.8796
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	4.89	0.8907	SUVH3.4,SDG950
AT2G15560			Putative endonuclease or glyco...		Potri.004G140400 [exp]	5.65	0.8695
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	8.83	0.8912
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	9.00	0.8756
AT5G45190			Cyclin family protein (.1.2)		Potri.005G097400 [exp]	9.38	0.8795
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	10.39	0.8718
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.010G189700 [exp]	10.39	0.8814
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	12.24	0.8834

Compare expression of checked genes

Potri.018G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.