Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39040 626 / 0 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT1G70610 201 / 5e-57 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT2G47000 199 / 4e-55 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G62150 192 / 8e-53 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G02530 181 / 9e-49 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G02520 179 / 3e-48 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G28415 179 / 4e-48 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28860 177 / 1e-47 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 176 / 4e-47 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G01830 176 / 4e-47 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059800 [exp] 812 / 0 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 793 / 0 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 776 / 0 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 665 / 0 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.010G003000 [exp] 199 / 5e-55 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.010G045900 [exp] 196 / 5e-55 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.014G113500 [exp] 192 / 6e-53 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 191 / 2e-52 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 191 / 2e-52 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021145 [exp] 728 / 0 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10007987 [exp] 715 / 0 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10038050 [exp] 196 / 5e-54 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 195 / 1e-53 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 195 / 2e-53 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10022270 [exp] 191 / 3e-53 AT1G70610 738 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10009988 [exp] 190 / 6e-52 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010012 [exp] 190 / 7e-52 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038049 [exp] 189 / 9e-52 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10039458 [exp] 186 / 1e-50 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.018G051800.3 pacid=42801708 polypeptide=Potri.018G051800.3.p locus=Potri.018G051800 ID=Potri.018G051800.3.v4.1 annot-version=v4.1 ATGGACAGGTTTGGAGGGGTGCATGGCTTTGGCAGCGGTGGTAGTGATGAACGGAGGGCTCTTCTTAGTCGAGGAGGAGGAAGAAAGAGAAATGATGCAT CTGAGGATAATCAGTTCACAGACCTTGAGCATGGAGATGCAGTGCCAGCTGCAAATGTGGGATTTGGTCGAGTGCTTTCACTGGCAAAGCCTGATGCAGT AAAGCTGATAATTGCTACGCTAGCTCTCCTGATTGCTTCCACATCAAGTATACTGATTCCAAAGTTTGGTGGAAAGATAATAGACATTGTGTCGGGAGAT ATAGAAACACCTGAACAGAAAGCTGAAGCTTTACATGCTGTCAACAACACCATACTAGAGATCTTTCTGATTGTCATAACTGGTTCAGTTTGCACAGCAC TCAGAGCATGGTTGTTTTCTTCCACTAGTGAAAGGGTGGTGGCTCGGTTGAGAAGTAACTTATTTGCTCACCTTATTAACCAGGAGGTGGCCTTCTTTGA TGTAACTAAAACTGGAGAGTTACTGAGCAGGTTATCCGAAGATACCCAGATCATAAAAAAAGCTGCAACCACGAATCTTTCTGAGGCCCTAAGAAATGTG TCAACTGCACTCATTGGTCTTGGCTTCATGTTTGCTACATCCTGGAAGTTGACGTTTTTGTCTTTGGCTGTTGTACCGGCTATTTCTGTTGCTGTACGTC AATTTGGCCGCTTCCTTCGTGAACTTTCTCACAAGACTCAAGCTGCTGCTGCTGCTTCTGCTTCAATTGCTGAGAAAGTGGTTGGGCTCTTCTTAGGAGG TCTCAATGCAGCATCAACCCTTTCAGTGATCGTAGTGGTGATATATGGAGCTAATTTAACAATTACAGGTTCTGTGACCGCTGGTGCTCTTACATCTTTC ATTCTCTACAGCCTCACAGTTGGCAGCTCTATATCTGGATTGTCAGGATTGTACACTGTGGCAATGAAAGCTGCAGGATCCAGCAGGCGGGTTTTCCAGC TTCTAGATCGTGTCTCATCCATGCCAAAGTCAGGGAACAAGTGTCCTTTGGGTGAACAGGATGGGGATGTGGAGTTAGATGATGTCTGGTTTGCCTATCC ATCCCGCCCCAACCACATGGTTCTCAAGGGAATAACATTGAAACTGCAGCCTGGCTCAAAAGTTGCTCTTGTTGGCCCTAGTGGAGGAGGAAAAACCACA ATTGCAAACTTGATTGAAAGGTTTTATGACCCAATTAAGGGAAAGATTCTCCTAAATGGGGTTCCTCTGGTAGAAATATCACACGAACATCTACACAGAA AGATCAGTATAGTGAGCCAGGAGCCTGTTCTTTTCAACTGTTCTATAGAGGATAACATCGCCTATGGGTGTGAGGGTAAAGTCAGCAGCATGGATATAGA AAATGCAGCAAAAATGGCCAATGCGCATGATTTCATTGCAAACTTCCCAGATAAATATCAAACTTTTGTAGGAGAACGTGGGTAA
AA sequence Show only first row Show all	>Potri.018G051800.3 pacid=42801708 polypeptide=Potri.018G051800.3.p locus=Potri.018G051800 ID=Potri.018G051800.3.v4.1 annot-version=v4.1 MDRFGGVHGFGSGGSDERRALLSRGGGRKRNDASEDNQFTDLEHGDAVPAANVGFGRVLSLAKPDAVKLIIATLALLIASTSSILIPKFGGKIIDIVSGD IETPEQKAEALHAVNNTILEIFLIVITGSVCTALRAWLFSSTSERVVARLRSNLFAHLINQEVAFFDVTKTGELLSRLSEDTQIIKKAATTNLSEALRNV STALIGLGFMFATSWKLTFLSLAVVPAISVAVRQFGRFLRELSHKTQAAAAASASIAEKVVGLFLGGLNAASTLSVIVVVIYGANLTITGSVTAGALTSF ILYSLTVGSSISGLSGLYTVAMKAAGSSRRVFQLLDRVSSMPKSGNKCPLGEQDGDVELDDVWFAYPSRPNHMVLKGITLKLQPGSKVALVGPSGGGKTT IANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEDNIAYGCEGKVSSMDIENAAKMANAHDFIANFPDKYQTFVGERG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.018G051800 [exp]	0	1
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G131100 [exp]	1.00	0.9506
					Potri.008G151550 [exp]	1.41	0.9478
AT1G11300			protein serine/threonine kinas...		Potri.004G027533 [exp]	5.38	0.9259
					Potri.006G028101 [exp]	6.40	0.9207
AT4G19160			unknown protein		Potri.001G193400 [exp]	20.39	0.9070
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291866 [exp]	27.74	0.9363
AT3G03080			Zinc-binding dehydrogenase fam...		Potri.017G002500 [exp]	31.46	0.9251
AT1G03670			ankyrin repeat family protein ...		Potri.018G077633 [exp]	33.15	0.9369
AT3G10650		AtNUP1	unknown protein		Potri.010G244700 [exp]	34.27	0.8805
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	34.94	0.9062	AAT1.2,PtrCAT12

Compare expression of checked genes

Potri.018G051800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.