Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26850 168 / 5e-47 histone-lysine N-methyltransferases (.1.2) AT3G18640 100 / 1e-21 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G33835 81 / 2e-15 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227200 [exp] 892 / 0 AT3G26850 158 / 2e-43 histone-lysine N-methyltransferases (.1.2) Potri.007G107800 [exp] 111 / 7e-25 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G061100 [exp] 105 / 4e-23 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.011G056600 [exp] 102 / 5e-22 AT2G33835 151 / 2e-38 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002082 [exp] 108 / 5e-24 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2) Lus10020889 [exp] 100 / 2e-21 AT3G18640 167 / 6e-43 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10003846 [exp] 96 / 3e-20 AT3G18640 192 / 4e-52 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10015319 [exp] 96 / 4e-20 AT2G33835 128 / 7e-31 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033487 [exp] 87 / 4e-17 AT3G18640 176 / 6e-46 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10025447 [exp] 80 / 4e-15 AT2G33835 140 / 1e-34 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G051900.2 pacid=42801696 polypeptide=Potri.018G051900.2.p locus=Potri.018G051900 ID=Potri.018G051900.2.v4.1 annot-version=v4.1 ATGTATGGTCAAGGGAGTTTTAATCCCCAGTCCGGTGGCCAAGGTTCTCAAACACCCATTGCTCCTTCATACTCTCACCGTCCGCCTCCTCTTCCTCACA ATTTCCAACTAGGCCCTCCTCCTCACACTGGTCAGCCAAGTTTGCCCCCGCCCCAACATCTACTCGCACCTGGTGGGACGGCAAATGCTGCCCAGTCTTG TTTACACTCTTCTACAACTGTTCGTGGAATTGCTCCTTTCCAGCATGTTTATGCACCTGCGCAGCATTCTTCCTATTTAGCATCGGGCCCTCCCCCTCCT CCTCCCTTTGGTTTGCATCGTCTTGAAATGTTACAGGCCCCGCTGCCTCCTAGAGGTTTACCTCCTCCTCCACCACCACCACCACCTTCTCAAGGTCAGA GGTTTTATAATTCGCTGCCACAACAGCTAGCTGGTGTGCAGGGTCTACAGCATATCCCCCCTCCACCTCCCCCACCTCTTCTTCCAACTTCCAGTTTCTC ATCATCTGCTCCCTTTGGGAGTTTTGCTGAGTCTAATGGTGCCAATCCTCAAATGCTTTCAATGGCTTCCCTACCACCACCCCCACCCCCACCACCAACC TCTTCTGCACCGTTGATTCCACCTTCTCCTCCTCAGTCTAACTCTCACATGTTGCCAGTATCTGCGCCTGTCCTAGCTGGTTCCTATCCACTGCTTCACT CTGATATTGCTTCCAACTCCAGCATACCTTCTGGTGATAAATTGGGCACTACTGGTTCTGTCAATGAAGCTATCCCTCTCAATAAGGGTGGACATAGTGT TCCTGTGCATGATGGCAACTTATATCTGGAAGGTGGAAGTGGCACTGAGGTAAATTGTAAATTGGATGAAGCAAAGAATTTTTCACAACCCAGTCATTTG ATGGTTGCCGCTGGATCCCACATGTCTGCTGATTCTGATTCCGATATGGAGATGGAAGATGATATTACCCAGTCTGACAATGACCAGGCAGCAAATCATC CTATTGGAGATTTAACTCACTGCAATCATTTGATAGCTGGAGACTCTGATATAAGAGAGCAGTTGCGTGAACTGCAGAGTTCAGCACAATCCGATGCTGC CACATTGGTTTTATCAGTCCCTGGTTCCTCCAGGCTGGATAATGGTCAACAAGTTTCTGAAGTTCATAGCCCAGTCATTAATTCAGCTGGAGCTGATGAA AAAAGTTCATCAAGGGCCATGTCAGCTGCTGGATGCGAGAATTCTGATAAGTATTCTAGTGAAGTTTTAAAAGGCGGCAGCCCATTCAGACTTCTGCAGG ATAATGCTTCTGAGGATAGCTCAGAAAATAATGATGAGCCCTGTTTGAAAAATACCATTCCTCAAACTGCTTCAAAATTAGTTACAGTTGGCTCTGAAGA TCTGCAGCAGCAACAGCCATCCTATTGTTTGAGTCACTTTGCTTCTGATAATGTGTATGGTCTATCTGGGAAGATAGGTTCTTCATCTGTGTTCCCACCA GATATTCTGGACTCAAATCAGCTGTCTTGCCTGCCCAATTTTGCAGTATCAAAAAATTCAACTCTCCCTAATACTTATCCAGCTAGTTTTGAGCTGCCGC TCAACTCCAAATTCAGTTCTGATGTTTTAAGACAAGAAAAGGTTGCATCCTACACTAGTATGTATGATCAATCTTCAAGTTGGAACCATATTTCACTTGA TGGACAAGATGCCATTGTTCGATCAAGACAGCCAATCTCTTCTCCCAGTTCTGCTAGGGATGTTGCACAAATTATTCCTAGGTCAGGTAGTGATCAGTAT GATCCATTTTTGGACAGCATTGAGCCAGCTTCAAACTCATTTAAGAGACTTGACCACATTCAGAAGTGGGAATCCAATAACACTGACATTATGCCGAGGC TTAGTGGCTCAGACAAATCATTGGATGTCGAAGAAAACAATAAGAAAGAGGTTAGAGGCATTGCTCTTTCTACATCCCTTGATAATGAGGAGTTTGGTGA GACTGCAGATGCAGAAGTCGGTGATGTTGAGGATCAGAGCCAAAGTAATCCTGTTGTAGTGAATGTGAATATGGGTGATATGGAGATCGATCAGGTTAAG TCTCCAGGGAAGAGCAAAAATAGCAAGGACTCCAGATCAATGAAGCTTTTCAAGGTTGCCCTTGCAGATTTTGTGAAGGAGGTTTTAAAGCCATCATGGC AACAGGGTAACATGAGCAAGGAAGCATTTAAGACTATTGTCAAGAAGACAGTTGATAAGGTTGCAGGAGCGATGAAGAGCCACCAAATACCCAAGTCCAA GGTGAAAATAGATCATTATATTGACTCATCGCAATGGAAATTGACAAAACTTGTGATGGGTTATGTTGATAAGTATGCCAAAGGGTAA
AA sequence Show only first row Show all	>Potri.018G051900.2 pacid=42801696 polypeptide=Potri.018G051900.2.p locus=Potri.018G051900 ID=Potri.018G051900.2.v4.1 annot-version=v4.1 MYGQGSFNPQSGGQGSQTPIAPSYSHRPPPLPHNFQLGPPPHTGQPSLPPPQHLLAPGGTANAAQSCLHSSTTVRGIAPFQHVYAPAQHSSYLASGPPPP PPFGLHRLEMLQAPLPPRGLPPPPPPPPPSQGQRFYNSLPQQLAGVQGLQHIPPPPPPPLLPTSSFSSSAPFGSFAESNGANPQMLSMASLPPPPPPPPT SSAPLIPPSPPQSNSHMLPVSAPVLAGSYPLLHSDIASNSSIPSGDKLGTTGSVNEAIPLNKGGHSVPVHDGNLYLEGGSGTEVNCKLDEAKNFSQPSHL MVAAGSHMSADSDSDMEMEDDITQSDNDQAANHPIGDLTHCNHLIAGDSDIREQLRELQSSAQSDAATLVLSVPGSSRLDNGQQVSEVHSPVINSAGADE KSSSRAMSAAGCENSDKYSSEVLKGGSPFRLLQDNASEDSSENNDEPCLKNTIPQTASKLVTVGSEDLQQQQPSYCLSHFASDNVYGLSGKIGSSSVFPP DILDSNQLSCLPNFAVSKNSTLPNTYPASFELPLNSKFSSDVLRQEKVASYTSMYDQSSSWNHISLDGQDAIVRSRQPISSPSSARDVAQIIPRSGSDQY DPFLDSIEPASNSFKRLDHIQKWESNNTDIMPRLSGSDKSLDVEENNKKEVRGIALSTSLDNEEFGETADAEVGDVEDQSQSNPVVVNVNMGDMEIDQVK SPGKSKNSKDSRSMKLFKVALADFVKEVLKPSWQQGNMSKEAFKTIVKKTVDKVAGAMKSHQIPKSKVKIDHYIDSSQWKLTKLVMGYVDKYAKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26850			histone-lysine N-methyltransfe...		Potri.018G051900 [exp]	0	1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	3.00	0.9072
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.007G086700 [exp]	3.46	0.8798
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Potri.006G083500 [exp]	3.74	0.8871	Pt-TAFII58.1
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.002G018900 [exp]	5.65	0.8613
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.005G094600 [exp]	8.48	0.8640
AT3G08020			PHD finger family protein (.1)		Potri.009G059700 [exp]	12.72	0.8586
AT3G19895			RING/U-box superfamily protein...		Potri.010G171100 [exp]	13.41	0.8545
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.002G209216 [exp]	14.28	0.8769
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.002G170600 [exp]	14.49	0.8572
AT4G17080			Histone H3 K4-specific methylt...		Potri.002G140000 [exp]	19.05	0.8563

Compare expression of checked genes

Potri.018G051900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.