Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55110 337 / 5e-111 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G45260 330 / 3e-108 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G02080 331 / 1e-107 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT5G44160 326 / 1e-106 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G50700 325 / 3e-106 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G03840 324 / 3e-105 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G66730 322 / 1e-104 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G14580 320 / 2e-104 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT3G13810 319 / 4e-103 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT4G02670 313 / 2e-102 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227600 [exp] 823 / 0 AT3G45260 308 / 9e-100 C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 426 / 2e-144 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.002G048000 [exp] 336 / 2e-110 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.013G019200 [exp] 337 / 4e-110 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.002G208444 [exp] 337 / 2e-109 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.006G129300 [exp] 333 / 9e-109 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 331 / 7e-108 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 329 / 1e-107 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.008G142500 [exp] 330 / 6e-107 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008396 [exp] 339 / 2e-110 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004840 [exp] 328 / 3e-106 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041723 [exp] 327 / 4e-106 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10010820 [exp] 314 / 3e-104 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 319 / 5e-103 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 315 / 7e-102 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 314 / 1e-101 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10041356 [exp] 321 / 3e-99 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004497 [exp] 308 / 3e-99 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 305 / 2e-98 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.018G052200.1 pacid=42801307 polypeptide=Potri.018G052200.1.p locus=Potri.018G052200 ID=Potri.018G052200.1.v4.1 annot-version=v4.1 ATGGATGAGAATATGTCCAATTTAACTTCAGCATCTGGTGAAGTAAGTGCTTCTTCAGGCAGCAGAATTGAAACTGGTGCTATATACCCTCAACACTCCT TTGATTCAACAAATCAACCGCCACCAAAGAAGAAAAAAAGTTTTCCAGGCAACCCAGACCCAGATGCGGAAGTGATAGCTTTGTCTCCCAACAGTCTGCA GGCAACAAACAGATTTATATGTGAGATCTGTAACAAAGGATTTAAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCATAACCTGCCATGGAAGCTA AAGCAAAGAACAAACAAAGAGGTGAAAAAGAAGGTATATGTGTGTCCAGAGGTTACTTGTGTGCACCATGACCCATCAAGGGCTCTTGGGGACCTTACAG GGATCAAGAAGCACTTTAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGCGAAAAGTGCTCAAAACGTTATGCAGTTCAATCAGACTGGAAAGCTCACTC TAAAATTTGTGGCACAAGAGAGTATAGATGTAATTGTGGCACTCTTTTCTCTAGGAGGGACAGTTTCATCACCCACAGAGCCTTCTGTGATGCTTTAGCA GAAGAGAGTGTCCGAGCGATCACTGTAAACCCTATTCTCTCCTCTCAGCAACCGGGCTCCTCTGCTTCACACCTGATCAATTTACAAGCCCTGTCGGTCA AAAGAGAGCATGATCAAAACCAGCATCATTTTAACCCTAGACCAGAATATAGTATCCCACCATGGTTAGTTTTTCCACCAATCGGAGATGCTGGTACAGG TCCACCACAAATCAATCTCTCCTCACAGCTATTCCCAGAAAATTTTAACCAGTCATTTTTGCAACATGGAAACCCTAGCACTAACCCTACTGTACTTCCT CCATTCCAGTCCGCATCAACAGTTTCCCCTCACATGTCTGCCACTGCATTGCTGCAAAAAGCAGCACAAATGGGGGTGACGATGAGCAAGCCTTCTCCGC CAGCTGCTGCTGCTGCCATACTTAGACCCCACCAAGGTCACATGTCTAATCTGAACCCTGGTTTCAGTTCCACGTTACCAGCTGTCACATCTGGTTTATT TTTGTCATCACGTGAAGGGATGGGAAGTGGGTTTGGCCATGGGCTGGTATCTTTTGAGAATAAAGCTGCTGCTGTCACATCTGGTATCATGGAACATCTT GCTGCGAGTGATGCAGGAGGGCCTTCTTTAGTCCATGATATGATGAGTTCTTTATCTTCTGCGAGTGGGTTTGATGGTTCATCCTTTGATAATGAGGATT TCAATGGAATGTTGAATCCAAAAAGAGACGGTGGTAATTTTCAGGAAATACTCTCAAAGTCAACAGAATCTCAATTTAGGAGGAGTGATCATGACGTTAG AACTTCTGCTGTTGGTAGTCCTCATGGAGGTGGCAATGATGACTTGACAAGAGATTTCTTGGGTCTCAAAGCATTTCCTCACAAAGACTGGCTCGATCAC ATTAACCCTTCAACATATGGGCAAAGGAACCAAAATCTACCACCACCTTGGCAAGGTTAG
AA sequence Show only first row Show all	>Potri.018G052200.1 pacid=42801307 polypeptide=Potri.018G052200.1.p locus=Potri.018G052200 ID=Potri.018G052200.1.v4.1 annot-version=v4.1 MDENMSNLTSASGEVSASSGSRIETGAIYPQHSFDSTNQPPPKKKKSFPGNPDPDAEVIALSPNSLQATNRFICEICNKGFKRDQNLQLHRRGHNLPWKL KQRTNKEVKKKVYVCPEVTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCNCGTLFSRRDSFITHRAFCDALA EESVRAITVNPILSSQQPGSSASHLINLQALSVKREHDQNQHHFNPRPEYSIPPWLVFPPIGDAGTGPPQINLSSQLFPENFNQSFLQHGNPSTNPTVLP PFQSASTVSPHMSATALLQKAAQMGVTMSKPSPPAAAAAILRPHQGHMSNLNPGFSSTLPAVTSGLFLSSREGMGSGFGHGLVSFENKAAAVTSGIMEHL AASDAGGPSLVHDMMSSLSSASGFDGSSFDNEDFNGMLNPKRDGGNFQEILSKSTESQFRRSDHDVRTSAVGSPHGGGNDDLTRDFLGLKAFPHKDWLDH INPSTYGQRNQNLPPPWQG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Potri.018G052200 [exp]	0	1
					Potri.014G023301 [exp]	7.48	0.7811
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	19.49	0.7709
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	28.86	0.7678	Pt-DET1.1
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Potri.018G139800 [exp]	30.93	0.6820	Pt-ACA8.6
AT5G24060			Pentatricopeptide repeat (PPR)...		Potri.004G072400 [exp]	32.03	0.7613
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Potri.002G252800 [exp]	40.98	0.7541	Pt-PIL5.1
AT4G09680		ATCTC1	conserved telomere maintenance...		Potri.002G129000 [exp]	44.63	0.7353
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	51.96	0.7341
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.004G103700 [exp]	57.22	0.7346
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.002G157200 [exp]	61.08	0.7533

Compare expression of checked genes

Potri.018G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.