Plant FIBer expression Database

Potri.018G052350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G052350.1 pacid=42800474 polypeptide=Potri.018G052350.1.p locus=Potri.018G052350 ID=Potri.018G052350.1.v4.1 annot-version=v4.1
ATGAAGGCCTTCAATCTAATGAGAGGGGAAGAAGATGATGATCAGAGTCCAGTAGTGATGGAAAGAGAGACAGCCGTTACAAGTAACAGAAAGGCTATGA
CAGAGGAGGTGATTGATTGCTGGATAAACATATGGGATATGCAATCAAGAGATGCAGCTATTCCAGACGTTATATTGAGATTCAAAATTTCTCAAGCAGC
TGTTAGTTCAAATCACAGAAAGGATCGAGCTCTCAGCAACTGGAAAAGGGAAGCTAAGCCCATCGGATGTTGTTGTGGTGAAGGCCCAAACAAATATATA
GGACCTACCGAGGATCAGTGTTTCTTGCTACCATGGAGCCAACAAACTGATTCTAATATTAATAATCAAGCGCGCTTACATCCAAAGGAGGAAGGAAACA
AATGGTTCTCGGCTCCCGACGGCAGCGTCCAGCAGCTGAATGATGATCACCGGATTCTCTTGACTCAGAAATTAAGCATGGAAGTCTTCGTTACATTCAT
AATTACAACTTAG
AA sequence
>Potri.018G052350.1 pacid=42800474 polypeptide=Potri.018G052350.1.p locus=Potri.018G052350 ID=Potri.018G052350.1.v4.1 annot-version=v4.1
MKAFNLMRGEEDDDQSPVVMERETAVTSNRKAMTEEVIDCWINIWDMQSRDAAIPDVILRFKISQAAVSSNHRKDRALSNWKREAKPIGCCCGEGPNKYI
GPTEDQCFLLPWSQQTDSNINNQARLHPKEEGNKWFSAPDGSVQQLNDDHRILLTQKLSMEVFVTFIITT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G052350
[exp]
0 1
Potri.008G206866
[exp]
3.74 0.9186
Potri.011G005050
[exp]
4.58 0.9035
AT3G10870 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ES... Potri.013G158200
[exp]
8.48 0.8779
AT2G16880 Pentatricopeptide repeat (PPR)... Potri.008G044000
[exp]
8.94 0.9031
AT4G03030 Galactose oxidase/kelch repeat... Potri.005G221300
[exp]
9.16 0.8905
AT5G06350 ARM repeat superfamily protein... Potri.011G095700
[exp]
10.39 0.8996
Potri.003G034132
[exp]
11.44 0.8156
AT5G14950 GMII, ATGMII golgi alpha-mannosidase II (.1... Potri.001G350400
[exp]
11.83 0.8925
AT4G13970 zinc ion binding (.1) Potri.002G140800
[exp]
12.24 0.8561
AT2G26100 Galactosyltransferase family p... Potri.018G053150
[exp]
12.84 0.8856

Potri.018G052350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.