Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11890 198 / 2e-62 EMB3135 EMBRYO DEFECTIVE 3135, unknown protein AT1G17620 136 / 1e-38 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 61 / 9e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 60 / 2e-10 NHL25 NDR1/HIN1-like 25 (.1) AT1G65690 59 / 7e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G21130 59 / 7e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 57 / 1e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01110 49 / 2e-06 unknown protein AT5G22870 45 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 44 / 3e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228600 [exp] 410 / 3e-146 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.003G039400 [exp] 193 / 8e-61 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 188 / 5e-59 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 80 / 3e-17 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.014G106100 [exp] 74 / 1e-15 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 73 / 2e-15 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G148200 [exp] 66 / 3e-12 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.009G003800 [exp] 63 / 1e-11 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G167300 [exp] 62 / 5e-11 AT2G46300 177 / 5e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026428 [exp] 305 / 2e-104 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10037638 [exp] 182 / 2e-56 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 181 / 8e-56 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 157 / 7e-47 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024987 [exp] 128 / 8e-37 AT5G11890 87 / 5e-21 EMBRYO DEFECTIVE 3135, unknown protein Lus10030193 [exp] 68 / 4e-13 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10010103 [exp] 64 / 8e-12 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 63 / 2e-11 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 60 / 2e-10 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10004202 [exp] 56 / 5e-09 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.018G052500.1 pacid=42801260 polypeptide=Potri.018G052500.1.p locus=Potri.018G052500 ID=Potri.018G052500.1.v4.1 annot-version=v4.1 ATGTCAGAGAAAGTCTTCCCTTCTTCAAAACCAGCAACCAATGGCACCGCCACTGCTAACACCACCACCACCGCAAGCAACCCACCAAACGCCACAGCAA ACAAATCCCACCTATACAACCCTACTTCCCGCCTACCTTACCGTCCACAACCTCACACCCGTCGCCATCGTAGCCGTAGTGGACGAAACATCTGCTGTTG TTGCTGTTTCTGGACAATCCTCACCATCCTCTTGCTCCTCCTCCTCGCTGCCATTGCTGGTACTGCTCTTTACATCCTTTACCGACCTCACCGCCCTACC TTCACCATCACCTCCCTACGCATCCACCGTCTTAATCTCACCACCTCTGCTGACTCCTCCATTTCCCACCTCTCCACTCTTCTTAACCTCACTATCATCT CCGAGAACCCCAATTCACATATCTCACTAGACTATGAACCCTTCACGGTCTCTGCATTATCTGATGGCAATGGTGTGTTTCTTGGTAATGGTTCTTTGCC TGCTTTCAGTTTGAGTAAAAAGAATCAGACAAGTTTTAGAAATGTTGTGGTTTCTGGGTCGAACGATCTTGACGTCGATGCACTAAATTCTTTGAGATCG GATCTGAAGAAGAAGAAAAGTGCAGATGGATCAGTCATGTTGAAGATTGAGATGGATACAAGGGTGAAAATGAAGGTGGGTGGATTAAAGACGAAGGAAG TCGGAATTAGAGTTACTTGTGATGGGATTAAAGGGTCTATACCGAAAGGTAAAACACCAACAGTTGCTGTTACTACCAAGTCTAAGTGTAAGGTTGATCT AAGAATCAAGATCTGGAGGTGGACCTTCTGA
AA sequence Show only first row Show all	>Potri.018G052500.1 pacid=42801260 polypeptide=Potri.018G052500.1.p locus=Potri.018G052500 ID=Potri.018G052500.1.v4.1 annot-version=v4.1 MSEKVFPSSKPATNGTATANTTTTASNPPNATANKSHLYNPTSRLPYRPQPHTRRHRSRSGRNICCCCCFWTILTILLLLLLAAIAGTALYILYRPHRPT FTITSLRIHRLNLTTSADSSISHLSTLLNLTIISENPNSHISLDYEPFTVSALSDGNGVFLGNGSLPAFSLSKKNQTSFRNVVVSGSNDLDVDALNSLRS DLKKKKSADGSVMLKIEMDTRVKMKVGGLKTKEVGIRVTCDGIKGSIPKGKTPTVAVTTKSKCKVDLRIKIWRWTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	0	1
AT1G12500			Nucleotide-sugar transporter f...		Potri.003G118000 [exp]	3.00	0.9296
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.005G061600 [exp]	3.46	0.9459
					Potri.006G056101 [exp]	4.24	0.9446
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Potri.016G134500 [exp]	4.89	0.9398
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	5.09	0.9229
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.009G160200 [exp]	5.56	0.8950
AT1G03080			kinase interacting (KIP1-like)...		Potri.003G164200 [exp]	5.74	0.9289
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.010G249600 [exp]	5.83	0.9138
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	5.91	0.9326
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	5.91	0.9404

Compare expression of checked genes

Potri.018G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.