Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26100 316 / 9e-107 Galactosyltransferase family protein (.1) AT1G53290 256 / 2e-83 Galactosyltransferase family protein (.1) AT3G14960 251 / 1e-81 Galactosyltransferase family protein (.1) AT1G32930 101 / 5e-24 Galactosyltransferase family protein (.1) AT1G05170 100 / 2e-23 Galactosyltransferase family protein (.1.2) AT4G26940 96 / 3e-22 Galactosyltransferase family protein (.1.2) AT1G33430 96 / 6e-22 Galactosyltransferase family protein (.1.2) AT1G11730 95 / 8e-22 Galactosyltransferase family protein (.1) AT1G77810 94 / 1e-21 Galactosyltransferase family protein (.1.2) AT2G32430 89 / 1e-19 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228900 [exp] 354 / 8e-122 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 265 / 4e-87 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 263 / 3e-86 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.001G450200 [exp] 104 / 5e-25 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.004G013900 [exp] 100 / 7e-24 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 99 / 5e-23 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 97 / 2e-22 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.011G004200 [exp] 96 / 3e-22 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 96 / 3e-22 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023955 [exp] 295 / 9e-99 AT2G26100 441 / 3e-155 Galactosyltransferase family protein (.1) Lus10014451 [exp] 295 / 4e-98 AT2G26100 437 / 1e-153 Galactosyltransferase family protein (.1) Lus10013683 [exp] 256 / 3e-83 AT1G53290 497 / 4e-178 Galactosyltransferase family protein (.1) Lus10017943 [exp] 163 / 4e-48 AT1G53290 328 / 2e-112 Galactosyltransferase family protein (.1) Lus10008282 [exp] 105 / 2e-25 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10033248 [exp] 104 / 4e-25 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10024750 [exp] 103 / 7e-25 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 103 / 8e-25 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 98 / 1e-22 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 95 / 8e-22 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.018G053150.1 pacid=42800436 polypeptide=Potri.018G053150.1.p locus=Potri.018G053150 ID=Potri.018G053150.1.v4.1 annot-version=v4.1 ATGCCACTCTTCTCCCACCGCTACATCTCATCCTCTCCTCCGCCATCCCAACCACCAACAATCCCAAAACCTCAAAACCCAACTTTATCCCTCCCTCAAC CCGCTCAAACCTGTTCCAACGGAGCATTGATTGACAGGCCTAAACTTCTTGGGTTTGTTGGGACTCAAACCGGGTTTGAATCCGGTGATCGCCGGGCTGC ACTTAGAAGTACTTGGTTTCCTTGTGACCCAGATGGAATTTTGAGGCCAAGTTCACTGCTGCTCTATGGCAAGTTGGAGCAAGCTACTGGTTTATCATTT AGGTTCCTAATAGGACGTTCAAAAGATGCAAAGAAAATGGCCCTGCTTGAGAAAGAGGTGGATAAGTACAAAGATTTCATGTTGGCCTATTTCAAAACAG CCTTTCAGCTTTTTGAAGCAGATTATTATGTCAAAGCTGATGATGATATCTATTTGCGTCCAGGACCAGTTATCACTGACCCTCATAAGAAGTGGTATGA GAAATCTGGACATCTGATTGGAAAAGAGTACTTCTTGCATGCTTATGGACCCATATATGTTCCTTCTGCAGAGGTTGTGGCTTCATTGGCTGCTGCTAGA AATAACAGTTTGAGAATGTTCAGCAATGAGGATGTCACCATTGGATCGTGGATGGTTGCTATGAATGTTCATCATGAAGACAACCGAGAAATATGTGATC CCCGAAGCACTCCAACATCTATAGCAGTTTGGGATATTCCTAAATGTTCTACTCAAGTTGGTTCTTGGGATTGCTTCCATTGCCTTATTTTTCCGTCTGG CGTTGCTACGAAGGTTCCTGTAAATGGCAATGTGGCCGCTGATATAAATAGTGGTGAAGTTGCTCGCAGGACGGTGGGATATAGTGGAGATGATCTAACT AATGTTTGCAGAGATGCTTCCTCTAAATGGCCGAGGCGAAAGATAGTGGGCAAGAAACGAGATGAAATTAAGAACGTTTAA
AA sequence Show only first row Show all	>Potri.018G053150.1 pacid=42800436 polypeptide=Potri.018G053150.1.p locus=Potri.018G053150 ID=Potri.018G053150.1.v4.1 annot-version=v4.1 MPLFSHRYISSSPPPSQPPTIPKPQNPTLSLPQPAQTCSNGALIDRPKLLGFVGTQTGFESGDRRAALRSTWFPCDPDGILRPSSLLLYGKLEQATGLSF RFLIGRSKDAKKMALLEKEVDKYKDFMLAYFKTAFQLFEADYYVKADDDIYLRPGPVITDPHKKWYEKSGHLIGKEYFLHAYGPIYVPSAEVVASLAAAR NNSLRMFSNEDVTIGSWMVAMNVHHEDNREICDPRSTPTSIAVWDIPKCSTQVGSWDCFHCLIFPSGVATKVPVNGNVAADINSGEVARRTVGYSGDDLT NVCRDASSKWPRRKIVGKKRDEIKNV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26100			Galactosyltransferase family p...		Potri.018G053150 [exp]	0	1
AT5G58510			unknown protein		Potri.001G280900 [exp]	2.00	0.9162
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.010G230200 [exp]	6.48	0.8819
AT5G24490			30S ribosomal protein, putativ...		Potri.011G055100 [exp]	7.93	0.8305
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162200 [exp]	8.48	0.8933
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	8.48	0.9061
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	9.48	0.8882
					Potri.011G005050 [exp]	9.79	0.8954
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.010G233500 [exp]	10.24	0.8799
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	10.48	0.8717
					Potri.018G052350 [exp]	12.84	0.8856

Compare expression of checked genes

Potri.018G053150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.