Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10970 440 / 3e-153 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT1G60960 434 / 1e-150 ATIRT3, IRT3 iron regulated transporter 3 (.1) AT4G33020 363 / 5e-124 ATZIP9, ZIP9 ZIP metal ion transporter family (.1) AT5G62160 224 / 2e-69 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1) AT1G05300 188 / 9e-56 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 184 / 3e-54 ZIP3 zinc transporter 3 precursor (.1) AT3G12750 181 / 3e-53 ZIP1 zinc transporter 1 precursor (.1) AT4G19690 169 / 2e-48 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT1G31260 169 / 2e-48 ZIP10 zinc transporter 10 precursor (.1) AT2G30080 166 / 1e-47 ATZIP6, ZIP6 ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006800 [exp] 261 / 6e-84 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.010G134300 [exp] 234 / 1e-73 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.010G173300 [exp] 201 / 1e-60 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.006G006600 [exp] 196 / 3e-59 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.008G083100 [exp] 197 / 4e-59 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1) Potri.001G160400 [exp] 194 / 4e-58 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.015G117700 [exp] 187 / 1e-55 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.015G117900 [exp] 183 / 9e-54 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.010G135400 [exp] 172 / 1e-49 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041647 [exp] 262 / 4e-84 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10006935 [exp] 216 / 1e-66 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10041613 [exp] 201 / 1e-60 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10024107 [exp] 199 / 8e-60 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10014062 [exp] 188 / 1e-55 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10019854 [exp] 184 / 2e-55 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10031307 [exp] 164 / 9e-49 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10040615 [exp] 166 / 2e-47 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10014063 [exp] 151 / 9e-42 AT3G12750 262 / 2e-85 zinc transporter 1 precursor (.1) Lus10031099 [exp] 105 / 7e-27 AT1G05300 114 / 2e-31 zinc transporter 5 precursor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF02535 [poplar] [flax] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Potri.018G053300.4 pacid=42801801 polypeptide=Potri.018G053300.4.p locus=Potri.018G053300 ID=Potri.018G053300.4.v4.1 annot-version=v4.1 ATGTTATTCAACGAGGATCTTTGGGAATTGCTTTACCTGGATCATTTCCAATCACAAGCTCAAGCCTTTTCGGACGTTTTATTTGAAGCAATCTCTAAAT CAATGTCAAATTCTAGCTGTGGATCCTCCGAACTGGAAATCTGCAGAGACCACTCATCAGCACTCATTCTCAAACTCATTGCCATAGCTTCAATTCTCTT CGGTGGCATAATTGGCATTGCAATACCGATAATCGGAAAGCACAGCCACTTCCTCAAGACCGATGGTAGCCTCTTTGTGTCTGCAAAGGCTTTTGCAGCA GGCGTAATTTTAGCCACCGGTTTTGTTCACATGCTATCAGCCGCGTCCGAGGCCCTTTCGGATCCTTGCTTACCCGAATACCCGTGGAAGAAGTTTCCAT TTTCAGGGTTTTTTGCTATGACGGCTTCTCTGCTAACCCTGCTTCTTGATTTTGTTGGGACCCAATATTATGAGAGGAAGCAAGGGTTGAACAAGGCTAG TGAGGAGCAAGTTCGAGTCGGGTCGGTGGATGCGAATCCGGGTCATGAATCAGGTATCGTGCCCATTATAGAAGTTAAAGAGTTGAATGGGTCTAGTGGG AAGGTGTTTGGTGAAGAGGAGCATGGTGGGATGCACATTGTGGGGATGCATGCGCACGCAGCACACCATAGACATAACCATCCTCATGGGCAGGATGCCT GTGATGGGCTTGTCAGCAGTCGTGACCATGGGCATGCGCATGGATCTGGGCACGAGCACGGTCATGAGCATGGAGAGAGTGATGTCACTGATGTGGAAAG TGGTTTGAGGCACGTTGTCGTTTCACAGATATTGGAACTTGGGATTCTCTCACATTCTGTGATCATTGGGTTATCTCTAGGAGTTTCACAGAGTCCGTGT ACCATAAGGCCGTTGATTGCTGCGTTATCATTTCACCAGTTTTTTGAAGGATTTGCGCTTGGAGGCTGCATATCCCAGGCACAATTTAAGACTCTGTCGA CTACAATAATGGCATGTTTTTTTGCCATAACAACCCCTGCGGGAATCGGCATTGGGACAGCCATTTCTTCATTTTACAATCCGAACAGCCCAAGAGCATT AGCCGCTGAAGGCATCTTAGATTCTCTGTCGGCCGGGATTCTTGTTTACATGGCTTTAGTGGACCTAATTGCTGCTGATTTTCTTAGTAAGAGGATGAGC TGCAATTTTAGACTTCAAGTAGTGTCTTATTGCATGCTTTTCCTCGGGGCTGGATTGATGTCTTCACTTGCAGTCTGGGCTTGA
AA sequence Show only first row Show all	>Potri.018G053300.4 pacid=42801801 polypeptide=Potri.018G053300.4.p locus=Potri.018G053300 ID=Potri.018G053300.4.v4.1 annot-version=v4.1 MLFNEDLWELLYLDHFQSQAQAFSDVLFEAISKSMSNSSCGSSELEICRDHSSALILKLIAIASILFGGIIGIAIPIIGKHSHFLKTDGSLFVSAKAFAA GVILATGFVHMLSAASEALSDPCLPEYPWKKFPFSGFFAMTASLLTLLLDFVGTQYYERKQGLNKASEEQVRVGSVDANPGHESGIVPIIEVKELNGSSG KVFGEEEHGGMHIVGMHAHAAHHRHNHPHGQDACDGLVSSRDHGHAHGSGHEHGHEHGESDVTDVESGLRHVVVSQILELGILSHSVIIGLSLGVSQSPC TIRPLIAALSFHQFFEGFALGGCISQAQFKTLSTTIMACFFAITTPAGIGIGTAISSFYNPNSPRALAAEGILDSLSAGILVYMALVDLIAADFLSKRMS CNFRLQVVSYCMLFLGAGLMSSLAVWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10970		ATZIP4, ZIP4	zinc transporter 4 precursor (...		Potri.018G053300 [exp]	0	1
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.006G189100 [exp]	5.29	0.7908	STA.1
AT4G25280			P-loop containing nucleoside t...		Potri.015G129000 [exp]	7.74	0.7735
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.003G166500 [exp]	8.66	0.7772
AT1G04790			RING/U-box superfamily protein...		Potri.003G176500 [exp]	10.95	0.7593
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	11.35	0.8104	Pt-RSH2.3
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.002G055400 [exp]	24.65	0.7713
AT5G50970			transducin family protein / WD...		Potri.012G108100 [exp]	28.14	0.7206
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.006G275000 [exp]	31.62	0.7778	Pt-VHA1.2
AT1G78420			RING/U-box superfamily protein...		Potri.011G096000 [exp]	31.74	0.7634
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	41.59	0.7652

Compare expression of checked genes

Potri.018G053300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.