Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33010 289 / 4e-91 ATGLDP1 glycine decarboxylase P-protein 1 (.1.2) AT2G26080 279 / 3e-87 ATGLDP2 glycine decarboxylase P-protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229300 [exp] 298 / 6e-94 AT4G33010 1791 / 0.0 glycine decarboxylase P-protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026429 [exp] 228 / 1e-68 AT4G33010 1394 / 0.0 glycine decarboxylase P-protein 1 (.1.2) Lus10024989 [exp] 228 / 2e-68 AT4G33010 1838 / 0.0 glycine decarboxylase P-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF02347 [poplar] [flax] GDC-P Glycine cleavage system P-protein
Representative CDS sequence Show only first row Show all	>Potri.018G053680.2 pacid=42800760 polypeptide=Potri.018G053680.2.p locus=Potri.018G053680 ID=Potri.018G053680.2.v4.1 annot-version=v4.1 ATGGCTGCAATGTATGCTGTCTATCATGGACCTGGAGGCCTTAAAACCATTGCCCAAAGGGTCCATGGTCTTGCTGGAGCGTTTGCTGTTGGACTGAAGA AACTTGGGACAGTTGAAGTACAGGGCCTTCCCTTCTTTGACACTGTGAAGGTTAAGTGTGTTGATGTAACTGCAATTGTTGATGCTGCTTACAAAAGCGA GATAAATTTGAGAGTTATAGATGCAAACACTATTACCGTTTCCTTTGATGAAACAACCACCTTAGAGGATGTTGATAAACTTTTCAAAGTTTTTGCTAGT GGAAAGCCTGTCCCTTTCACAGCTGCATCTCTGGCACCAGAGGTTCAGAATGTGATCCCATCTGGACTAACAAGGGAGAGCCCTTATCTGGCTCATCCAA TCTTCAACCTGTACCATACCGAGCATGAGCTGCTCAGGTATTTGCATAGACTGAAATCAAAAGATCTTTCTTTGTGCCACAGTGGTATACCAGCCCCCGA ACAATCTCAGCCACTTGGCACCATTTCAGCTGCGCCTTGGGGCTCTGCACTAATCTTGCCAGTATCATACACTTACATAGCAATGATGGGTTCTAAGGGC CTAACTGATGCTTCAAAGATTGCTATACTGAACGCAAACTACATGGTAAAGCGTCTGGAGAATTACTACCCCATTCTTTTCCGCGGTGTCAATGGAACAG TTGCCCATGAATTCATTGTGGACTTGAGAGGCTTTAAGAACACTGCTGGCATTGGGCCTGAAGATGTAGCCTAA
AA sequence Show only first row Show all	>Potri.018G053680.2 pacid=42800760 polypeptide=Potri.018G053680.2.p locus=Potri.018G053680 ID=Potri.018G053680.2.v4.1 annot-version=v4.1 MAAMYAVYHGPGGLKTIAQRVHGLAGAFAVGLKKLGTVEVQGLPFFDTVKVKCVDVTAIVDAAYKSEINLRVIDANTITVSFDETTTLEDVDKLFKVFAS GKPVPFTAASLAPEVQNVIPSGLTRESPYLAHPIFNLYHTEHELLRYLHRLKSKDLSLCHSGIPAPEQSQPLGTISAAPWGSALILPVSYTYIAMMGSKG LTDASKIAILNANYMVKRLENYYPILFRGVNGTVAHEFIVDLRGFKNTAGIGPEDVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053680 [exp]	0	1
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053640 [exp]	1.00	0.8981
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053720 [exp]	3.46	0.8648
					Potri.001G205601 [exp]	9.53	0.7354
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.010G151400 [exp]	16.73	0.8451	LPD2
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045100 [exp]	27.38	0.8064
AT1G20140		ASK4	SKP1-like 4 (.1)		Potri.009G135800 [exp]	28.93	0.8149	SKP1.4
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.007G061540 [exp]	28.98	0.7802
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	29.22	0.8200
ATCG00220		ATCG00220.1, PS...	photosystem II reaction center...		Potri.012G101301 [exp]	29.59	0.6893
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G078400 [exp]	34.40	0.7698	UF3.3

Compare expression of checked genes

Potri.018G053680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.