Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11850 517 / 1e-169 Protein kinase superfamily protein (.1) AT1G08720 456 / 2e-145 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G73660 434 / 2e-136 protein tyrosine kinase family protein (.1) AT1G18160 433 / 3e-136 Protein kinase superfamily protein (.1) AT5G49470 355 / 1e-112 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT5G03730 359 / 3e-110 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT3G06620 356 / 2e-109 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06640 353 / 7e-109 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 348 / 9e-107 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06630 338 / 7e-104 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229400 [exp] 1622 / 0 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 466 / 4e-149 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 458 / 5e-146 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 445 / 3e-140 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.015G040100 [exp] 443 / 3e-139 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.008G105100 [exp] 363 / 6e-112 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 361 / 2e-111 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.016G095750 [exp] 357 / 4e-109 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.002G111200 [exp] 359 / 7e-109 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000937 [exp] 463 / 3e-149 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 464 / 4e-149 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10031341 [exp] 450 / 3e-144 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 450 / 9e-143 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10009062 [exp] 432 / 6e-136 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10038955 [exp] 429 / 5e-135 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10016912 [exp] 364 / 6e-113 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10023865 [exp] 364 / 1e-111 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 364 / 2e-111 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10037772 [exp] 362 / 2e-111 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.018G053800.8 pacid=42802206 polypeptide=Potri.018G053800.8.p locus=Potri.018G053800 ID=Potri.018G053800.8.v4.1 annot-version=v4.1 ATGTCGAAGATGAAGCATCTACTAAGAAAGCTCCACATCGGTGACCATCACAACCGATTTGGTGGCGAGACCCGACCCGTTTCGAGTTCAAACACGAGTC CCAGTACCACTCCGAGTCCGTCAAATGAAAGAATCGAGCCCGTTGAATCCACGGCAGTGGATCGGACGGCAGTCGAAGCGATTAGTAGTAGTAATAGTAG TGGGATTGATTTTAATTTATTAGAGGAGGAATTTCAAGTGCAATTGGCTTTAGCGATTAGTGCGTCGGATCCGGATTCGACTCTGGATACGGAATCTGCT CAGATCGATGCTGCTAAGCGGATTAGTCTCCGGAGCTGTCCCGTCGTCCCGGTTACTGATACCGATTCTCTTGCTGAGTCTCTCTCTCTCCGATACTGGA GCTATAGTGTTGTAAATTATAATGAAAAAGTGATGGATGGCTTTTATGATGTTTGTGGACTTACCTCAAACTCAGTTGTTCAAGGGAATATGCCATTGTT AGTGGATCTTCAAGCAATATCAATATCAGAAAATGTTGATTATGAAGTTATCATGGTAAACCGATATGTTGATGCTGAACTGCAAGATCTTGAGAAAAAA GCTTATATCATGTCCCTGGAAAGCACAGTCTCTGATGGCTTGATCCAGAAAATTGCTGATGTTGTTGTTGATAGAATGGGTGGTCCGGTGAGTGATGCTG GTGAGATGTCAAGCAGGTGGAAAAGGCGAAGCAAAGAGCTACAGAACACTCTGAACTCTATCATTCTACCCCTTGGTTGTCTTGATGTTGGACTTTCTCG CCACAGGGCCTTGCTCTTTAAGGTGATAGCTGATAGGATTAATCTCCCATGTATGCTGGTTAAAGGGAGCTACTATACTGGCACTGATGATGGAGCTGTA AATTTGATTAAGATGGACGATGGAAGTGAATACATTATTGATCTGATGGGTGCTCCGGGCACTCTAATTCCTCCTGAGGTGCCCAGCAGCCATCTTCCAA CAGCTGGATTTGACATAAGTGGGTTCGCCAGTCTTACAGAAACCCCCAAAGATTCAACTGCGTTGATGGGTGAAGGATCTGGGGTTCCTGCAATTTCAAC TAACCTGGATAGGATTCCCCATGTTGGCAGCTCAACATCAGGAGAAGGATTATATGTCAGCATCAAAACAAACGAGAATGATCTGAACTTAGTTGAGAAA AATCAAATTGAGAAATTTGAATATGATTTTGGGAAGCTCAGGTTATCAGGTTCTGAAAAACCTTCATCTGCACAAAAAATTAAAGTTAAAAATGTTTCCA AGTATGTCATCAGTGCAGCGAAGAATCCTGAATTTGCACAGAAATTACACGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTCCTGATTTGTTTTCAGA TATGAATCTGGGTGAATCAAAGCTGCTTGAGAAAGCTCACCCAGAAAACAGGGTAAATCTAGGTGACCAGCTTCTCTGTTGTTTAGATGACATGTTGACA GGGCATGAACAGACCCTTATGTCCTTAACTAGGGAGGGTATGTTGAACAACATTAGGTGTGATTATGAACAAGAACAGTTTGCTGAGGGCTCAGCCGATG AACCTAGAAAATTGAATGTGAATATCTCAAATTCTGACTTGTCTTTCCCTTCCGATGTCACCAGTGAAGGATTTGTGCTTCTTAATAATAGAACAAATGA AAATTTGCAAATAGATACCTCCGGCATAGATATGGTGTCTATTCATGCATCTGGAATTGCTGGAAGTGCTATGCATGAGAATCCGCTTCATGATTCTTTC TTGTTCTCTGGATTGGAACCTTGCCAATTACAACCTGAACATGCCTTGGTTAGTAGTGAGAACCAGTGCTTTCAGGAGAAAACAGGAAGGCTTTTTAACA TGGAAACTGGCAAAGAATCTGATTTCAAATTGATGGAAACAGCAAACAGTGGTCTGCATACTAGCAATGGTTACAGTGAGAGAATAAACCCTATGCTGGG GGAGGTGGCTGAATGGGAAATTCCATGGGAGGATCTTGAGATCGGTGAACGTATAGGCATTGGTTCATATGGCGAGGTCTACCATGGGGATTGGAATGGC ACTGAAGTTGCTGTGAAGAAATTTTTGAACCAGGGTTTCTCTGGTGATGTGTTGGTTCAGTTCAAATGTGAAGCTGAAATCATGCTAAGATTAAGACATC CTAACGTTGTTCTTTTCATGGGAGCAGTTACTCGTCCCCCGCACTTATCAATACTAACTGAGTTCTTGCCCAGAGGGAGTTTGTATAGGTTACTGCATCG TCCCAATTCTCAGATTGATGAAAAGAGGCGAATGCAAATGGCTCTTGATGTGGCAAAGGGAATGAATTACTTGCACACTAGCCATCCTACCATAGTGCAT CGAGATTTAAAGTCTCCTAATCTCCTCGTCAACAAAAACTGGCTTGTTAAGGTCTGTGATTTTGGATTGTCACGCATTAAGCACCATACTTTTCTGTCCT CGAAGTCTACTGCTGGAACGCCTGAATGGATGGCACCTGAAGTCCTGAGAAACGAACCAGCAAATGAGAAATGTGATATATACAGCTTTGGTGTGATACT ATGGGAGTTGGCTACGTGTCAAATCCCTTGGAAAGGCTTAAATCCAATGCAGGTTGTGGGAGCTGTTGGATTCCAAAATCGACATCTTGAAATTCCAGGG TACATTGATCCAGCCATTGCCCAGATAATACGAGATTGTTGGCAATTGGAGCCAAATTTGCGACCATCTTTTGCACAGCTTATAACCCGTCTTCGATGCG CTCAACATCTACTTGTTGAGACACCAAACCATACAAACCAAACAGCAGACTGA
AA sequence Show only first row Show all	>Potri.018G053800.8 pacid=42802206 polypeptide=Potri.018G053800.8.p locus=Potri.018G053800 ID=Potri.018G053800.8.v4.1 annot-version=v4.1 MSKMKHLLRKLHIGDHHNRFGGETRPVSSSNTSPSTTPSPSNERIEPVESTAVDRTAVEAISSSNSSGIDFNLLEEEFQVQLALAISASDPDSTLDTESA QIDAAKRISLRSCPVVPVTDTDSLAESLSLRYWSYSVVNYNEKVMDGFYDVCGLTSNSVVQGNMPLLVDLQAISISENVDYEVIMVNRYVDAELQDLEKK AYIMSLESTVSDGLIQKIADVVVDRMGGPVSDAGEMSSRWKRRSKELQNTLNSIILPLGCLDVGLSRHRALLFKVIADRINLPCMLVKGSYYTGTDDGAV NLIKMDDGSEYIIDLMGAPGTLIPPEVPSSHLPTAGFDISGFASLTETPKDSTALMGEGSGVPAISTNLDRIPHVGSSTSGEGLYVSIKTNENDLNLVEK NQIEKFEYDFGKLRLSGSEKPSSAQKIKVKNVSKYVISAAKNPEFAQKLHAVLLESGASPPPDLFSDMNLGESKLLEKAHPENRVNLGDQLLCCLDDMLT GHEQTLMSLTREGMLNNIRCDYEQEQFAEGSADEPRKLNVNISNSDLSFPSDVTSEGFVLLNNRTNENLQIDTSGIDMVSIHASGIAGSAMHENPLHDSF LFSGLEPCQLQPEHALVSSENQCFQEKTGRLFNMETGKESDFKLMETANSGLHTSNGYSERINPMLGEVAEWEIPWEDLEIGERIGIGSYGEVYHGDWNG TEVAVKKFLNQGFSGDVLVQFKCEAEIMLRLRHPNVVLFMGAVTRPPHLSILTEFLPRGSLYRLLHRPNSQIDEKRRMQMALDVAKGMNYLHTSHPTIVH RDLKSPNLLVNKNWLVKVCDFGLSRIKHHTFLSSKSTAGTPEWMAPEVLRNEPANEKCDIYSFGVILWELATCQIPWKGLNPMQVVGAVGFQNRHLEIPG YIDPAIAQIIRDCWQLEPNLRPSFAQLITRLRCAQHLLVETPNHTNQTAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	0	1
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	4.69	0.7772
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	5.19	0.7831
AT5G23610			unknown protein		Potri.004G137000 [exp]	5.91	0.7407
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.004G066600 [exp]	6.92	0.7677
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	7.07	0.7611
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	7.93	0.7358
AT2G19390			unknown protein		Potri.018G056400 [exp]	8.66	0.7714
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	8.94	0.7373
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	13.49	0.7244
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	14.49	0.6765

Compare expression of checked genes

Potri.018G053800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.