Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATKEA4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11800 741 / 0 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 738 / 0 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT5G51710 597 / 0 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT4G00630 103 / 8e-23 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 99 / 3e-21 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G04850 89 / 2e-18 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230400 [exp] 908 / 0 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.012G130500 [exp] 613 / 0 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 606 / 0 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.014G080800 [exp] 102 / 3e-22 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 99 / 3e-21 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 90 / 1e-18 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040549 [exp] 722 / 0 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008002 [exp] 666 / 0 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10031106 [exp] 605 / 0 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031687 [exp] 563 / 0 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10007999 [exp] 509 / 3e-178 AT2G19600 569 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008000 [exp] 128 / 5e-34 AT5G51710 149 / 3e-42 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10020485 [exp] 84 / 6e-17 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10007104 [exp] 84 / 2e-16 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10018844 [exp] 76 / 7e-14 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 64 / 3e-10 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.018G054100.2 pacid=42800689 polypeptide=Potri.018G054100.2.p locus=Potri.018G054100 ID=Potri.018G054100.2.v4.1 annot-version=v4.1 ATGTTGAGAAGAGAACCATTTCTCTGCAAACTCATCTTTTTGCTCTACTGTTTCGCTTCGCTCTCACTCGCTGACGAACTCAACGAGTCAGATCGGCTCG AGTTCACCGCCAACACTTCAATCTCTAACACCTCTCTCTCTAAACCTAGAGAAGGCAGTAGCTTCGCTGATATCATCGATAAAGCTCTCGAGAAAGAGTT CACTGAAAATGACCAAAACGAAGCAACTGATGCTGGAAGCTTCAACAACAGCGTCGCAGAACAGCAGGCAGTTTTGGAAACTGTTGCCAGAGTTAAATCG AAGAAAAATGACTCGAAAGAGGAAAAGTTGTTTAAATTTCAACATGTTTTCAATTTGGACAATGATAATGGAGCAGAAGATACCCCAACACTGATTGATC GAAAGGATAATGTCTTCATTATATCCAATTTTAAATCAAAATATCCAGTGCTGCAGCTAGACTTGCGATTGATATCAGATTTGGTTGTCGTCATTGTGTC TGCAACTTGTGGTGGCATTGCATTTGCTTGTGCTGGACAACCGGTCATTACTGGATACTTGCTAGCAGGATCTATTATTGGTCCTGGAGGATTCAACTTT GTCAGTGAAATGGTTCAAGTTGAGACGGTGGCTCAGTTTGGTGTAATTTTTCTTCTCTTTGCCTTGGGCCTGGAGTTCTCGACAACAAAACTTCGAGTTG TCCGAGCAGTTGCTGTTGTAGGTGGCCTGCTTGAAATTATTTTATTCATGTTCTTATGTGGCATTACAGCCATGTTATGTGGTGGTAAGTCTTCTGAGGG TGTGTTTGTTGGTGCATTTCTTTCGATGTCTTCAACAGCAGTGGTATTGAAGTTCTTGATGGAAAAGAATTCTACTAACGCCCTTCATGGGCAAGTTACC ATTGGAACTCTTATTTTGCAGGACTGTGCAGTTGGTTTGCTGTTTGCACTGCTTCCTGTTTTAGGTGGAACTTCTGGTGTTCTTCAAGGACTAATGTCCA TGACTAAAGTGTTGGTGGTGTTGATTGCATTTTTGGCTGTTCTGTCTATATTGTCTTGTACTTGGGTTCCATGGTTTCTTAAATTGATGATGAGCCTATC ATCACAGACAAATGAACTCTATCAATTAGCATCAGTCGCGTTCTGCTTGCTTGTGGCCTGGAGTAGTGATAAGCTTGGTCTAAGCCTAGAACTGGGTTCA TTTGCTGCTGGGGTGATGATATCAACAACTGATCTTGCTCAGCATACACTAGAACAAATTGAACCTATTCGGAATTTCTTTGCTGCTCTTTTCCTTGCCA GCATTGGAATGCTGATCCATGTTCATTTTCTCTGGAGCCATGTTGATATATTACTGGCATCTGTTATATTGGTCATCATCATAAAAACAGCCATAATCAC TGCTGTTGTGAAGGGATTTGGTTACAACAACAAGACATCACTTCTTGTTGGAATGTCTTTGGCTCAAATAGGAGAATTTGCTTTTGTTCTTCTTAGCCGT GCTTCTAATCTTCATTTAGTTGAGGGAAAACTTTACCTGCTGCTTCTTGGGACAACAGCCCTTAGCTTGGTGACAACGACTCTGCTTTTCAAGCTAATTC CTGCTGTAATGCATCTAGGAGTGCTGTTACGGTGGTTCCCTCCCGACAGTGCAGTCGAGGTTGGATCTAAAGGAGAAATCTTCCGATCAGACAGTGGTAA ACAACGGATTAGTGTGTTGGTTGAAGTACCTCATAACTCATGA
AA sequence Show only first row Show all	>Potri.018G054100.2 pacid=42800689 polypeptide=Potri.018G054100.2.p locus=Potri.018G054100 ID=Potri.018G054100.2.v4.1 annot-version=v4.1 MLRREPFLCKLIFLLYCFASLSLADELNESDRLEFTANTSISNTSLSKPREGSSFADIIDKALEKEFTENDQNEATDAGSFNNSVAEQQAVLETVARVKS KKNDSKEEKLFKFQHVFNLDNDNGAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNF VSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVVGGLLEIILFMFLCGITAMLCGGKSSEGVFVGAFLSMSSTAVVLKFLMEKNSTNALHGQVT IGTLILQDCAVGLLFALLPVLGGTSGVLQGLMSMTKVLVVLIAFLAVLSILSCTWVPWFLKLMMSLSSQTNELYQLASVAFCLLVAWSSDKLGLSLELGS FAAGVMISTTDLAQHTLEQIEPIRNFFAALFLASIGMLIHVHFLWSHVDILLASVILVIIIKTAIITAVVKGFGYNNKTSLLVGMSLAQIGEFAFVLLSR ASNLHLVEGKLYLLLLGTTALSLVTTTLLFKLIPAVMHLGVLLRWFPPDSAVEVGSKGEIFRSDSGKQRISVLVEVPHNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	0	1	ATKEA4.2
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	1.00	0.9335
AT4G11450			Protein of unknown function (D...		Potri.001G104200 [exp]	2.00	0.8927
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	2.44	0.8867
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	3.46	0.9199	ALDH22.1
AT1G10180			unknown protein		Potri.015G119300 [exp]	5.91	0.8907
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	6.00	0.8948	Pt-VPS33.2
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169600 [exp]	6.48	0.8648
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.011G042400 [exp]	7.34	0.8515	FBL6
AT4G18465			RNA helicase family protein (....		Potri.004G052700 [exp]	7.93	0.8848
AT5G16850		ATTERT	telomerase reverse transcripta...		Potri.003G022600 [exp]	9.48	0.8140

Compare expression of checked genes

Potri.018G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.