Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32980 327 / 4e-106 HD ATH1 homeobox gene 1 (.1) AT2G16400 163 / 8e-44 HD BLH7 BEL1-like homeodomain 7 (.1) AT2G27220 161 / 1e-43 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G19700 162 / 2e-43 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT4G34610 161 / 6e-43 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G35940 162 / 2e-42 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT1G75410 158 / 6e-42 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G75430 145 / 3e-39 HD BLH11 BEL1-like homeodomain 11 (.1) AT4G36870 148 / 2e-37 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT5G41410 140 / 4e-35 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230700 [exp] 868 / 0 AT4G32980 314 / 1e-100 homeobox gene 1 (.1) Potri.001G216600 [exp] 191 / 3e-52 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 189 / 9e-52 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 182 / 2e-49 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 181 / 4e-49 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 173 / 2e-46 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 169 / 8e-45 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.001G100800 [exp] 163 / 6e-43 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.002G031000 [exp] 162 / 2e-42 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026432 [exp] 336 / 1e-109 AT4G32980 304 / 7e-99 homeobox gene 1 (.1) Lus10004201 [exp] 184 / 5e-50 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 181 / 4e-49 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 172 / 2e-46 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 164 / 3e-43 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 162 / 1e-42 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10017481 [exp] 162 / 1e-42 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 162 / 3e-42 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10021498 [exp] 153 / 2e-39 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10033192 [exp] 152 / 2e-39 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.018G054700.6 pacid=42802255 polypeptide=Potri.018G054700.6.p locus=Potri.018G054700 ID=Potri.018G054700.6.v4.1 annot-version=v4.1 ATGGAGAATGGTTTGTTTAGTGTTCCAATAGATATGGCAGGAAGGAATTCTGTTACCATGGACTGTTCATCACAAAGAACCCCCAACTCACTTGTCCAGT TGGATTCATTTAACCTTAACCACCATAATCAAACATTGGCTGGATTTACCATGCTTCCAACATTGCAAGGAGAACCTATAAGTGATCTCCATGCAAACAT TCACTCAGCAAATCGATCTTCATTTATGAACTCAGATGCATTAGTTGCATCTCTTGGAAGGAATGTTGTGGGAGATACTTTACCTGGCTGTTCACGTTCT GCTGGTAACCCTCCATTTGAAGAGCATTTTGGGAGTGGAATCCCTAATTATGCACTTGCTACTCTTGTGGCTACAAGAAGTGGTCTTCAAGAAACTCTGA ACAACTTGGCAATTTCAGGACCATCAAGCTACCCTTTGGAAGAGTCAAGGTCATTTGTTTCAAATGATTGCACCAATGCTTTGAATTCATCATTTGCGTC ATCTTTGAATTATGGATGTGGTGAAGTATTTGGTAGTACGAATGGTAAGGAGGATTTTGACAGGTTTCCTGCTCCCATAGAGCTCAGTGGACGAACACCT TTAAGAGCAGGGTTTCAACCACATTCGTCCGTTGGAAACCTGCAACCAAATGGCTGGATAACATCAAATGGTGTGAATGTGAGTGCAGATGAATGTTTTG CATCTGGTAAACTTGCTAATGAGCTCTCTTTAAGCCTTGCCACATCTCAGCCTTCTGTCATGGATAGCAGAAGTATCCCTGATCAAAGCTCGGAGATCGC TCTTAATCATGTAGCACGCCACTTCTCGAAAGAAACAAGGTTAGGCTCTGAACAAACTTCTTGTAGCAGTAAGGAGCTTTCTTTGAGTTGCAGTTCTTAC AAAACTGGTCAATCCTCACAAGTATTATTAGGATCCAGATATCTTCATGTAATACAGGAAATACTTGCTCAAATTGCAAGCTATTCACTGGAGAATCTAG ACCAGGGGTTCAAGACTGGAGCAAGTACACTATTCTCTTCAAGTTACGCAATGGAGGGAGGGATGCCGCTGATGGGCTTTGATAAATCTCCTGATGGGAG TGATAGACTTGATATTCAAATGGATCCAGCACTGCAGAAACGGGCACTGGAAGCAAAGAGAACACAATTGCTAACTCTACTGCAAGTGGTTGATGAACGA TATAGCCAATGCTTGGATGAAATACACACAGTTATTTCAGCATTCCATGCTGCAACTGAGTTGGACCCACAGATTCACACACGTTTTTCTCTTCAAACAA TATCTTTCTTGTACAAACGCCTTAGGGAGCGGATCAGCAACCAAATCCTAGCAATGGGAGCTCATTTGGATAGTGGAGACACCATAGAGACAGAAGGATC TTTTGGAACTTCATACTTACAAAAGCAATGGACTCTCCAGCAGCTGAAGAAAAATGACCATCAACTATGGAGACCCCAGAGAGGCTTACCAGAAAGATCT GTCTCAGTTCTGCGTGCATGGATGTTTCAGAACTTTCTTCACCCGTACCCTAAAGATGCAGAGAAGCATTTGCTTGCGGCAAAAAGCGGACTAACAAGAA GCCAGGTATCAAATTGGTTTATAAATGCTCGTGTTCGTCTATGGAAACCAATGATAGAGGAGATGTATGCCGAGATGAACAGAAGAAAGGCTCACCAAAA CGAAGAGGGAACCAACAGCAATCACAGAATTAGCATATCAGCAATCCAAGATTTAATGTGA
AA sequence Show only first row Show all	>Potri.018G054700.6 pacid=42802255 polypeptide=Potri.018G054700.6.p locus=Potri.018G054700 ID=Potri.018G054700.6.v4.1 annot-version=v4.1 MENGLFSVPIDMAGRNSVTMDCSSQRTPNSLVQLDSFNLNHHNQTLAGFTMLPTLQGEPISDLHANIHSANRSSFMNSDALVASLGRNVVGDTLPGCSRS AGNPPFEEHFGSGIPNYALATLVATRSGLQETLNNLAISGPSSYPLEESRSFVSNDCTNALNSSFASSLNYGCGEVFGSTNGKEDFDRFPAPIELSGRTP LRAGFQPHSSVGNLQPNGWITSNGVNVSADECFASGKLANELSLSLATSQPSVMDSRSIPDQSSEIALNHVARHFSKETRLGSEQTSCSSKELSLSCSSY KTGQSSQVLLGSRYLHVIQEILAQIASYSLENLDQGFKTGASTLFSSSYAMEGGMPLMGFDKSPDGSDRLDIQMDPALQKRALEAKRTQLLTLLQVVDER YSQCLDEIHTVISAFHAATELDPQIHTRFSLQTISFLYKRLRERISNQILAMGAHLDSGDTIETEGSFGTSYLQKQWTLQQLKKNDHQLWRPQRGLPERS VSVLRAWMFQNFLHPYPKDAEKHLLAAKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKAHQNEEGTNSNHRISISAIQDLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.018G054700 [exp]	0	1
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	1.00	0.8160
AT5G50330			Protein kinase superfamily pro...		Potri.015G091000 [exp]	4.00	0.7851
AT2G40860			protein kinase family protein ...		Potri.016G030800 [exp]	13.67	0.6905
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	16.43	0.7163
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	17.83	0.7090
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.012G098500 [exp]	20.90	0.6658
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.010G029700 [exp]	21.90	0.7301	Pt-ATMPK16.1
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074800 [exp]	25.45	0.6925
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.002G061100 [exp]	27.12	0.6357
AT5G42810		ATIPK1	inositol-pentakisphosphate 2-k...		Potri.002G032900 [exp]	27.34	0.6755

Compare expression of checked genes

Potri.018G054700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.